View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21622_low_3 (Length: 673)
Name: NF21622_low_3
Description: NF21622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21622_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 429; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 80 - 599
Target Start/End: Complemental strand, 22074211 - 22073691
Alignment:
| Q |
80 |
tcctttccttctattactcttttcaataagatagcagagtacaattgagaccatgcatgggaaaatgtcaaactatatctttttcacttccaaaagcgtg |
179 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| |
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| T |
22074211 |
tcctttccttctattactcttttcaataagatagcagagtacaattgagaccatgcatggaaaaatgtcaaactatatcttttccccttccaaaagcgtg |
22074112 |
T |
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| Q |
180 |
gttaacttcatttatagaacaacatnnnnnnnnctctctcatcacttttattaactaaatacaagttctaaaactaacatatgtcatggatcctcttcaa |
279 |
Q |
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||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22074111 |
gttaacttcatttatagaaaaacataaaaaaaactctctcatcacttttattaactaaatacaagttctaaaactaacctatgtcatggatcctcttcaa |
22074012 |
T |
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| Q |
280 |
cttaggcaacaagaacaacagtcaacttcaa-agagagaaggaaattagtgttagaaggcaagaaagtatgtgtgtctactgatattaacacacgaactt |
378 |
Q |
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||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| || || |
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| T |
22074011 |
cttaggcaaaaagaacaacagtcaacttcaagaaagagaaggaaattagtgttagaaggcaagaaagtatgtgtgtctactaacattaacacaccaattt |
22073912 |
T |
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| Q |
379 |
ctaaagtcaaaccaaaactcaaagtcattaaacctattaatttgaatgaaacagtgcttcaacatgaaaatgcagcagcaggaagagaaaacaggaaaag |
478 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22073911 |
ctaaagtcaaaccaaaactcaaagtcattaaacctattaattttaatgaaacagtgcttcaacatgaaaatgcagcagcaggaagagaaaacaggaaaag |
22073812 |
T |
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| Q |
479 |
aattctctaccaaagtaaggcacttgctgcatccaaaaaagtttgtgttcattctcctcaactgcccaatccaaaacaatttgatggaagcagaatccaa |
578 |
Q |
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| T |
22073811 |
aattctctaccaaagtaaggcacttgctgcatcaaaaaaagtttgtgttcattctcctcaactgcccaatccaaaacaatttaatggaagcagaatccaa |
22073712 |
T |
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| Q |
579 |
ccagaggtcgcggttctaagc |
599 |
Q |
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| T |
22073711 |
ccagaggtcgcagttctaagc |
22073691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 595 - 660
Target Start/End: Original strand, 22073601 - 22073666
Alignment:
| Q |
595 |
taagcgtctggatatagatgaagattcggcatgacctgttaatggcacatgtaacttgttattttg |
660 |
Q |
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| T |
22073601 |
taagcgtctggatatagatgaagattcagcatgacctgttaatggcacatctaacttgttattttg |
22073666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 22076392 - 22076346
Alignment:
| Q |
39 |
ccactttctcctacattagccactctaccaaaagctaactgtccttt |
85 |
Q |
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| T |
22076392 |
ccactttctcctacattagcccctctaccaaaaattaacggtccttt |
22076346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 22073288 - 22073316
Alignment:
| Q |
15 |
acaaatttgctgagaaggttgatcccact |
43 |
Q |
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| T |
22073288 |
acaaatttgctgagaaggttgatcccact |
22073316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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