View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21622_low_5 (Length: 614)

Name: NF21622_low_5
Description: NF21622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21622_low_5
NF21622_low_5
[»] chr7 (14 HSPs)
chr7 (270-577)||(40409494-40409798)
chr7 (1-170)||(40409899-40410084)
chr7 (220-251)||(40409818-40409849)
chr7 (584-614)||(5732059-5732089)
chr7 (584-614)||(6799646-6799676)
chr7 (584-614)||(17896477-17896507)
chr7 (584-614)||(33174034-33174064)
chr7 (584-614)||(33921760-33921790)
chr7 (581-614)||(31430786-31430819)
chr7 (582-614)||(8382053-8382085)
chr7 (584-612)||(10227485-10227513)
chr7 (582-614)||(41675171-41675203)
chr7 (584-612)||(46563358-46563386)
chr7 (584-612)||(47408342-47408370)
[»] chr8 (10 HSPs)
chr8 (580-614)||(18842756-18842790)
chr8 (583-614)||(8453218-8453249)
chr8 (583-614)||(34982056-34982087)
chr8 (583-614)||(35052280-35052311)
chr8 (584-614)||(2888451-2888481)
chr8 (584-614)||(15596571-15596601)
chr8 (584-614)||(18291690-18291720)
chr8 (584-614)||(38482775-38482805)
chr8 (584-612)||(14061132-14061160)
chr8 (580-612)||(23848788-23848820)
[»] chr4 (20 HSPs)
chr4 (580-614)||(23621573-23621607)
chr4 (580-614)||(53599766-53599800)
chr4 (581-614)||(354196-354229)
chr4 (581-614)||(33755012-33755045)
chr4 (581-614)||(44013894-44013927)
chr4 (583-614)||(44217936-44217967)
chr4 (580-611)||(52061791-52061822)
chr4 (584-614)||(8735619-8735649)
chr4 (584-614)||(9834510-9834540)
chr4 (584-614)||(22828385-22828415)
chr4 (584-614)||(38009750-38009780)
chr4 (584-614)||(38617293-38617323)
chr4 (584-614)||(56576088-56576118)
chr4 (582-611)||(36408985-36409014)
chr4 (582-611)||(36423151-36423180)
chr4 (584-612)||(9746231-9746259)
chr4 (582-614)||(26620333-26620365)
chr4 (584-612)||(38027559-38027587)
chr4 (582-614)||(39671555-39671587)
chr4 (584-612)||(49089138-49089166)
[»] chr1 (15 HSPs)
chr1 (581-614)||(1024783-1024816)
chr1 (581-614)||(13566906-13566939)
chr1 (580-612)||(51613640-51613672)
chr1 (581-612)||(32168289-32168320)
chr1 (580-611)||(35700351-35700382)
chr1 (581-612)||(36318581-36318612)
chr1 (584-614)||(12231051-12231081)
chr1 (584-614)||(18033806-18033836)
chr1 (584-614)||(29830980-29831010)
chr1 (584-614)||(35531275-35531305)
chr1 (584-614)||(43500733-43500763)
chr1 (581-614)||(21927675-21927708)
chr1 (584-612)||(30686640-30686668)
chr1 (582-614)||(31487757-31487789)
chr1 (584-612)||(32348206-32348234)
[»] chr6 (6 HSPs)
chr6 (580-612)||(17193387-17193419)
chr6 (582-614)||(22050275-22050307)
chr6 (584-614)||(27605416-27605446)
chr6 (582-614)||(12732402-12732434)
chr6 (584-612)||(17251239-17251267)
chr6 (582-614)||(24663606-24663638)
[»] chr5 (14 HSPs)
chr5 (582-614)||(2673956-2673988)
chr5 (580-614)||(1087909-1087943)
chr5 (584-614)||(4175460-4175490)
chr5 (584-614)||(4985155-4985185)
chr5 (584-614)||(7579647-7579677)
chr5 (584-614)||(9127331-9127361)
chr5 (584-614)||(16124240-16124270)
chr5 (584-614)||(25344169-25344199)
chr5 (584-614)||(38910482-38910512)
chr5 (584-614)||(39073253-39073283)
chr5 (583-612)||(6008096-6008125)
chr5 (584-612)||(4427385-4427413)
chr5 (584-612)||(18437303-18437331)
chr5 (584-612)||(25785869-25785897)
[»] chr2 (12 HSPs)
chr2 (582-614)||(44360660-44360692)
chr2 (583-614)||(15182986-15183017)
chr2 (584-614)||(10812426-10812456)
chr2 (584-614)||(11222302-11222332)
chr2 (584-614)||(15893566-15893596)
chr2 (584-614)||(34357405-34357435)
chr2 (580-614)||(34399429-34399463)
chr2 (584-614)||(36375800-36375830)
chr2 (580-612)||(8443907-8443939)
chr2 (583-611)||(13849700-13849728)
chr2 (584-612)||(26342809-26342837)
chr2 (579-611)||(38072213-38072245)
[»] chr3 (17 HSPs)
chr3 (579-614)||(49123749-49123784)
chr3 (584-614)||(2858566-2858596)
chr3 (584-614)||(20105400-20105430)
chr3 (584-614)||(29803875-29803905)
chr3 (584-614)||(33491128-33491158)
chr3 (584-614)||(40139831-40139861)
chr3 (584-614)||(41425856-41425886)
chr3 (584-614)||(45101347-45101377)
chr3 (584-614)||(51219082-51219112)
chr3 (581-614)||(1201040-1201073)
chr3 (580-609)||(13158424-13158453)
chr3 (582-614)||(2642688-2642720)
chr3 (580-612)||(2642931-2642963)
chr3 (582-614)||(34266427-34266459)
chr3 (582-614)||(36234591-36234623)
chr3 (584-612)||(41351183-41351211)
chr3 (582-614)||(54106490-54106522)
[»] scaffold0280 (1 HSPs)
scaffold0280 (584-614)||(8381-8411)
[»] scaffold0886 (1 HSPs)
scaffold0886 (585-614)||(4741-4770)
[»] scaffold0002 (1 HSPs)
scaffold0002 (580-609)||(148535-148564)
[»] scaffold0009 (1 HSPs)
scaffold0009 (584-612)||(147111-147139)


Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-147; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 270 - 577
Target Start/End: Complemental strand, 40409798 - 40409494
Alignment:
Q  270 ttcttctttcttgcactgctttgaatggtgttagttagtttgaattgaattttgttgtgagcttacaagttaggggttggaattggataaaacagacaaa 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  40409798 ttcttctttcttgcactgctttgaatggtgttagttagtttgaattgaattttgttgtgagtttacaagttaggggttggaattggataaaacagacaaa 40409699  T
Q  370 atcaagtgctagcattaaatatatactaggctgcattcctgataccagaatttcaacctcgtggggnnnnnnnagtcttttcaatgttatggttgccttg 469  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  40409698 atcaagtgctagcattaaatatatac---gctgcattcctgataccagaatttcaacctcgtgggggttttttagtcttttcaatgttatggttgccttg 40409602  T
Q  470 ctgtggtgtactatagtacttgcgaaatcataaacaccgctcacctcgtggcactcgtcgtcgagtttttactcttttatatggctgcctttgtttttag 569  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40409601 ctgcggtgtactatagtacttgcgaaatcataaacaccgctcacctcgtggcactcgtcgtcgagtttttactcttttatatggctgcctttgtttttag 40409502  T
Q  570 atatccgt 577  Q
    ||||||||    
T  40409501 atatccgt 40409494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 40410084 - 40409899
Alignment:
Q  1 acccaagaatcgattatctgaatttcttgatgtgattatgaattcttgcaggaagagcactgcataggaggcaagaaaagaaaaggaaagatttaagtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40410084 acccaagaatcgattatctgaatttcttgatgtgattatgaattcttgcaggaagagcactgcataggaggcaagaaaagaaaaggaaagatttaagtaa 40409985  T
Q  101 tgtt----------------tttagactaagtcaaattcaacttaaaaaattgaatagaaatcacattgattcatatttaatgttt 170  Q
    ||||                ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40409984 tgttttgagatggtaatgaatttagactaagtcaaattcaacttaaaaaattgaaaagaaatcacattgattcatatttaatgttt 40409899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 251
Target Start/End: Complemental strand, 40409849 - 40409818
Alignment:
Q  220 cttacagattgagaaaacgaatgaggtagctc 251  Q
    ||||||||||||||||||||||||||||||||    
T  40409849 cttacagattgagaaaacgaatgaggtagctc 40409818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Original strand, 5732059 - 5732089
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  5732059 tactacctccgttcctttttaattgtcacat 5732089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Complemental strand, 6799676 - 6799646
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  6799676 tactacctccgttcctttttaattgtcacat 6799646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Original strand, 17896477 - 17896507
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  17896477 tactacctccgttcctttttaattgtcacat 17896507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Complemental strand, 33174064 - 33174034
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  33174064 tactacctccgttcctttttaattgtcacat 33174034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Original strand, 33921760 - 33921790
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  33921760 tactacctccgttcctttttaattgtcacat 33921790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 614
Target Start/End: Complemental strand, 31430819 - 31430786
Alignment:
Q  581 tattactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||| |||||||||||||||||||||    
T  31430819 tattactacctctgttcctttttaattgtcacat 31430786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 582 - 614
Target Start/End: Complemental strand, 8382085 - 8382053
Alignment:
Q  582 attactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||| ||||||    
T  8382085 attactacctccgttcctttttaattatcacat 8382053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 612
Target Start/End: Complemental strand, 10227513 - 10227485
Alignment:
Q  584 tactacctccgttcctttttaattgtcac 612  Q
    |||||||||||||||||||||||||||||    
T  10227513 tactacctccgttcctttttaattgtcac 10227485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 582 - 614
Target Start/End: Original strand, 41675171 - 41675203
Alignment:
Q  582 attactacctccgttcctttttaattgtcacat 614  Q
    ||||||||||| |||||||||||||||||||||    
T  41675171 attactacctctgttcctttttaattgtcacat 41675203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 612
Target Start/End: Complemental strand, 46563386 - 46563358
Alignment:
Q  584 tactacctccgttcctttttaattgtcac 612  Q
    |||||||||||||||||||||||||||||    
T  46563386 tactacctccgttcctttttaattgtcac 46563358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 612
Target Start/End: Complemental strand, 47408370 - 47408342
Alignment:
Q  584 tactacctccgttcctttttaattgtcac 612  Q
    |||||||||||||||||||||||||||||    
T  47408370 tactacctccgttcctttttaattgtcac 47408342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 580 - 614
Target Start/End: Complemental strand, 18842790 - 18842756
Alignment:
Q  580 ttattactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||||||    
T  18842790 ttattactacctccgttcctttttaattgtcacat 18842756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 583 - 614
Target Start/End: Original strand, 8453218 - 8453249
Alignment:
Q  583 ttactacctccgttcctttttaattgtcacat 614  Q
    ||||||||||||||||||||||||||||||||    
T  8453218 ttactacctccgttcctttttaattgtcacat 8453249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 583 - 614
Target Start/End: Complemental strand, 34982087 - 34982056
Alignment:
Q  583 ttactacctccgttcctttttaattgtcacat 614  Q
    ||||||||||||||||||||||||||||||||    
T  34982087 ttactacctccgttcctttttaattgtcacat 34982056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 583 - 614
Target Start/End: Complemental strand, 35052311 - 35052280
Alignment:
Q  583 ttactacctccgttcctttttaattgtcacat 614  Q
    ||||||||||||||||||||||||||||||||    
T  35052311 ttactacctccgttcctttttaattgtcacat 35052280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Original strand, 2888451 - 2888481
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  2888451 tactacctccgttcctttttaattgtcacat 2888481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Complemental strand, 15596601 - 15596571
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  15596601 tactacctccgttcctttttaattgtcacat 15596571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Complemental strand, 18291720 - 18291690
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  18291720 tactacctccgttcctttttaattgtcacat 18291690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Original strand, 38482775 - 38482805
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  38482775 tactacctccgttcctttttaattgtcacat 38482805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 612
Target Start/End: Original strand, 14061132 - 14061160
Alignment:
Q  584 tactacctccgttcctttttaattgtcac 612  Q
    |||||||||||||||||||||||||||||    
T  14061132 tactacctccgttcctttttaattgtcac 14061160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 580 - 612
Target Start/End: Complemental strand, 23848820 - 23848788
Alignment:
Q  580 ttattactacctccgttcctttttaattgtcac 612  Q
    |||||||||||||||||||||||||| ||||||    
T  23848820 ttattactacctccgttcctttttaagtgtcac 23848788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 580 - 614
Target Start/End: Original strand, 23621573 - 23621607
Alignment:
Q  580 ttattactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||||||    
T  23621573 ttattactacctccgttcctttttaattgtcacat 23621607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 580 - 614
Target Start/End: Original strand, 53599766 - 53599800
Alignment:
Q  580 ttattactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||||||    
T  53599766 ttattactacctccgttcctttttaattgtcacat 53599800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 581 - 614
Target Start/End: Complemental strand, 354229 - 354196
Alignment:
Q  581 tattactacctccgttcctttttaattgtcacat 614  Q
    ||||||||||||||||||||||||||||||||||    
T  354229 tattactacctccgttcctttttaattgtcacat 354196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 581 - 614
Target Start/End: Original strand, 33755012 - 33755045
Alignment:
Q  581 tattactacctccgttcctttttaattgtcacat 614  Q
    ||||||||||||||||||||||||||||||||||    
T  33755012 tattactacctccgttcctttttaattgtcacat 33755045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 581 - 614
Target Start/End: Original strand, 44013894 - 44013927
Alignment:
Q  581 tattactacctccgttcctttttaattgtcacat 614  Q
    ||||||||||||||||||||||||||||||||||    
T  44013894 tattactacctccgttcctttttaattgtcacat 44013927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 583 - 614
Target Start/End: Complemental strand, 44217967 - 44217936
Alignment:
Q  583 ttactacctccgttcctttttaattgtcacat 614  Q
    ||||||||||||||||||||||||||||||||    
T  44217967 ttactacctccgttcctttttaattgtcacat 44217936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 580 - 611
Target Start/End: Complemental strand, 52061822 - 52061791
Alignment:
Q  580 ttattactacctccgttcctttttaattgtca 611  Q
    ||||||||||||||||||||||||||||||||    
T  52061822 ttattactacctccgttcctttttaattgtca 52061791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Complemental strand, 8735649 - 8735619
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  8735649 tactacctccgttcctttttaattgtcacat 8735619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Complemental strand, 9834540 - 9834510
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  9834540 tactacctccgttcctttttaattgtcacat 9834510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Original strand, 22828385 - 22828415
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  22828385 tactacctccgttcctttttaattgtcacat 22828415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Original strand, 38009750 - 38009780
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  38009750 tactacctccgttcctttttaattgtcacat 38009780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Original strand, 38617293 - 38617323
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  38617293 tactacctccgttcctttttaattgtcacat 38617323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Original strand, 56576088 - 56576118
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  56576088 tactacctccgttcctttttaattgtcacat 56576118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 582 - 611
Target Start/End: Complemental strand, 36409014 - 36408985
Alignment:
Q  582 attactacctccgttcctttttaattgtca 611  Q
    ||||||||||||||||||||||||||||||    
T  36409014 attactacctccgttcctttttaattgtca 36408985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 582 - 611
Target Start/End: Complemental strand, 36423180 - 36423151
Alignment:
Q  582 attactacctccgttcctttttaattgtca 611  Q
    ||||||||||||||||||||||||||||||    
T  36423180 attactacctccgttcctttttaattgtca 36423151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 612
Target Start/End: Original strand, 9746231 - 9746259
Alignment:
Q  584 tactacctccgttcctttttaattgtcac 612  Q
    |||||||||||||||||||||||||||||    
T  9746231 tactacctccgttcctttttaattgtcac 9746259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 582 - 614
Target Start/End: Original strand, 26620333 - 26620365
Alignment:
Q  582 attactacctccgttcctttttaattgtcacat 614  Q
    ||||||| |||||||||||||||||||||||||    
T  26620333 attactaactccgttcctttttaattgtcacat 26620365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 612
Target Start/End: Original strand, 38027559 - 38027587
Alignment:
Q  584 tactacctccgttcctttttaattgtcac 612  Q
    |||||||||||||||||||||||||||||    
T  38027559 tactacctccgttcctttttaattgtcac 38027587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 582 - 614
Target Start/End: Complemental strand, 39671587 - 39671555
Alignment:
Q  582 attactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||| ||||||||||||||    
T  39671587 attactacctccgttcctatttaattgtcacat 39671555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 612
Target Start/End: Complemental strand, 49089166 - 49089138
Alignment:
Q  584 tactacctccgttcctttttaattgtcac 612  Q
    |||||||||||||||||||||||||||||    
T  49089166 tactacctccgttcctttttaattgtcac 49089138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 581 - 614
Target Start/End: Complemental strand, 1024816 - 1024783
Alignment:
Q  581 tattactacctccgttcctttttaattgtcacat 614  Q
    ||||||||||||||||||||||||||||||||||    
T  1024816 tattactacctccgttcctttttaattgtcacat 1024783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 581 - 614
Target Start/End: Complemental strand, 13566939 - 13566906
Alignment:
Q  581 tattactacctccgttcctttttaattgtcacat 614  Q
    ||||||||||||||||||||||||||||||||||    
T  13566939 tattactacctccgttcctttttaattgtcacat 13566906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 580 - 612
Target Start/End: Complemental strand, 51613672 - 51613640
Alignment:
Q  580 ttattactacctccgttcctttttaattgtcac 612  Q
    |||||||||||||||||||||||||||||||||    
T  51613672 ttattactacctccgttcctttttaattgtcac 51613640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 581 - 612
Target Start/End: Original strand, 32168289 - 32168320
Alignment:
Q  581 tattactacctccgttcctttttaattgtcac 612  Q
    ||||||||||||||||||||||||||||||||    
T  32168289 tattactacctccgttcctttttaattgtcac 32168320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 580 - 611
Target Start/End: Original strand, 35700351 - 35700382
Alignment:
Q  580 ttattactacctccgttcctttttaattgtca 611  Q
    ||||||||||||||||||||||||||||||||    
T  35700351 ttattactacctccgttcctttttaattgtca 35700382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 581 - 612
Target Start/End: Complemental strand, 36318612 - 36318581
Alignment:
Q  581 tattactacctccgttcctttttaattgtcac 612  Q
    ||||||||||||||||||||||||||||||||    
T  36318612 tattactacctccgttcctttttaattgtcac 36318581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Original strand, 12231051 - 12231081
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  12231051 tactacctccgttcctttttaattgtcacat 12231081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Original strand, 18033806 - 18033836
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  18033806 tactacctccgttcctttttaattgtcacat 18033836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Complemental strand, 29831010 - 29830980
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  29831010 tactacctccgttcctttttaattgtcacat 29830980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Original strand, 35531275 - 35531305
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  35531275 tactacctccgttcctttttaattgtcacat 35531305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Complemental strand, 43500763 - 43500733
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  43500763 tactacctccgttcctttttaattgtcacat 43500733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 614
Target Start/End: Original strand, 21927675 - 21927708
Alignment:
Q  581 tattactacctccgttcctttttaattgtcacat 614  Q
    ||||||||| ||||||||||||||||||||||||    
T  21927675 tattactacatccgttcctttttaattgtcacat 21927708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 612
Target Start/End: Complemental strand, 30686668 - 30686640
Alignment:
Q  584 tactacctccgttcctttttaattgtcac 612  Q
    |||||||||||||||||||||||||||||    
T  30686668 tactacctccgttcctttttaattgtcac 30686640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 582 - 614
Target Start/End: Original strand, 31487757 - 31487789
Alignment:
Q  582 attactacctccgttcctttttaattgtcacat 614  Q
    |||| ||||||||||||||||||||||||||||    
T  31487757 attattacctccgttcctttttaattgtcacat 31487789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 612
Target Start/End: Complemental strand, 32348234 - 32348206
Alignment:
Q  584 tactacctccgttcctttttaattgtcac 612  Q
    |||||||||||||||||||||||||||||    
T  32348234 tactacctccgttcctttttaattgtcac 32348206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 580 - 612
Target Start/End: Complemental strand, 17193419 - 17193387
Alignment:
Q  580 ttattactacctccgttcctttttaattgtcac 612  Q
    |||||||||||||||||||||||||||||||||    
T  17193419 ttattactacctccgttcctttttaattgtcac 17193387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 582 - 614
Target Start/End: Complemental strand, 22050307 - 22050275
Alignment:
Q  582 attactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||||    
T  22050307 attactacctccgttcctttttaattgtcacat 22050275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Original strand, 27605416 - 27605446
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  27605416 tactacctccgttcctttttaattgtcacat 27605446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 582 - 614
Target Start/End: Complemental strand, 12732434 - 12732402
Alignment:
Q  582 attactacctccgttcctttttaattgtcacat 614  Q
    |||||||| ||||||||||||||||||||||||    
T  12732434 attactacttccgttcctttttaattgtcacat 12732402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 612
Target Start/End: Original strand, 17251239 - 17251267
Alignment:
Q  584 tactacctccgttcctttttaattgtcac 612  Q
    |||||||||||||||||||||||||||||    
T  17251239 tactacctccgttcctttttaattgtcac 17251267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 582 - 614
Target Start/End: Complemental strand, 24663638 - 24663606
Alignment:
Q  582 attactacctccgttcctttttaattgtcacat 614  Q
    |||||||| ||||||||||||||||||||||||    
T  24663638 attactacatccgttcctttttaattgtcacat 24663606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 582 - 614
Target Start/End: Original strand, 2673956 - 2673988
Alignment:
Q  582 attactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||||    
T  2673956 attactacctccgttcctttttaattgtcacat 2673988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 580 - 614
Target Start/End: Original strand, 1087909 - 1087943
Alignment:
Q  580 ttattactacctccgttcctttttaattgtcacat 614  Q
    ||||||||||||||||| |||||||||||||||||    
T  1087909 ttattactacctccgtttctttttaattgtcacat 1087943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Original strand, 4175460 - 4175490
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  4175460 tactacctccgttcctttttaattgtcacat 4175490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Original strand, 4985155 - 4985185
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  4985155 tactacctccgttcctttttaattgtcacat 4985185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Original strand, 7579647 - 7579677
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  7579647 tactacctccgttcctttttaattgtcacat 7579677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Original strand, 9127331 - 9127361
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  9127331 tactacctccgttcctttttaattgtcacat 9127361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Original strand, 16124240 - 16124270
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  16124240 tactacctccgttcctttttaattgtcacat 16124270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Complemental strand, 25344199 - 25344169
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  25344199 tactacctccgttcctttttaattgtcacat 25344169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Complemental strand, 38910512 - 38910482
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  38910512 tactacctccgttcctttttaattgtcacat 38910482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Complemental strand, 39073283 - 39073253
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  39073283 tactacctccgttcctttttaattgtcacat 39073253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 583 - 612
Target Start/End: Complemental strand, 6008125 - 6008096
Alignment:
Q  583 ttactacctccgttcctttttaattgtcac 612  Q
    ||||||||||||||||||||||||||||||    
T  6008125 ttactacctccgttcctttttaattgtcac 6008096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 612
Target Start/End: Original strand, 4427385 - 4427413
Alignment:
Q  584 tactacctccgttcctttttaattgtcac 612  Q
    |||||||||||||||||||||||||||||    
T  4427385 tactacctccgttcctttttaattgtcac 4427413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 612
Target Start/End: Original strand, 18437303 - 18437331
Alignment:
Q  584 tactacctccgttcctttttaattgtcac 612  Q
    |||||||||||||||||||||||||||||    
T  18437303 tactacctccgttcctttttaattgtcac 18437331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 612
Target Start/End: Original strand, 25785869 - 25785897
Alignment:
Q  584 tactacctccgttcctttttaattgtcac 612  Q
    |||||||||||||||||||||||||||||    
T  25785869 tactacctccgttcctttttaattgtcac 25785897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 582 - 614
Target Start/End: Complemental strand, 44360692 - 44360660
Alignment:
Q  582 attactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||||    
T  44360692 attactacctccgttcctttttaattgtcacat 44360660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 583 - 614
Target Start/End: Original strand, 15182986 - 15183017
Alignment:
Q  583 ttactacctccgttcctttttaattgtcacat 614  Q
    ||||||||||||||||||||||||||||||||    
T  15182986 ttactacctccgttcctttttaattgtcacat 15183017  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Complemental strand, 10812456 - 10812426
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  10812456 tactacctccgttcctttttaattgtcacat 10812426  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Original strand, 11222302 - 11222332
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  11222302 tactacctccgttcctttttaattgtcacat 11222332  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Original strand, 15893566 - 15893596
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  15893566 tactacctccgttcctttttaattgtcacat 15893596  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Complemental strand, 34357435 - 34357405
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  34357435 tactacctccgttcctttttaattgtcacat 34357405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 580 - 614
Target Start/End: Complemental strand, 34399463 - 34399429
Alignment:
Q  580 ttattactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||| ||||||    
T  34399463 ttattactacctccgttcctttttaattatcacat 34399429  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Complemental strand, 36375830 - 36375800
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  36375830 tactacctccgttcctttttaattgtcacat 36375800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 580 - 612
Target Start/End: Complemental strand, 8443939 - 8443907
Alignment:
Q  580 ttattactacctccgttcctttttaattgtcac 612  Q
    ||||||||||||| |||||||||||||||||||    
T  8443939 ttattactacctctgttcctttttaattgtcac 8443907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 583 - 611
Target Start/End: Original strand, 13849700 - 13849728
Alignment:
Q  583 ttactacctccgttcctttttaattgtca 611  Q
    |||||||||||||||||||||||||||||    
T  13849700 ttactacctccgttcctttttaattgtca 13849728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 612
Target Start/End: Complemental strand, 26342837 - 26342809
Alignment:
Q  584 tactacctccgttcctttttaattgtcac 612  Q
    |||||||||||||||||||||||||||||    
T  26342837 tactacctccgttcctttttaattgtcac 26342809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 579 - 611
Target Start/End: Original strand, 38072213 - 38072245
Alignment:
Q  579 gttattactacctccgttcctttttaattgtca 611  Q
    |||||||||||||||||||||||||| ||||||    
T  38072213 gttattactacctccgttcctttttatttgtca 38072245  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 579 - 614
Target Start/End: Complemental strand, 49123784 - 49123749
Alignment:
Q  579 gttattactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||| |||||||    
T  49123784 gttattactacctccgttcctttttaatagtcacat 49123749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Original strand, 2858566 - 2858596
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  2858566 tactacctccgttcctttttaattgtcacat 2858596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Complemental strand, 20105430 - 20105400
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  20105430 tactacctccgttcctttttaattgtcacat 20105400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Complemental strand, 29803905 - 29803875
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  29803905 tactacctccgttcctttttaattgtcacat 29803875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Original strand, 33491128 - 33491158
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  33491128 tactacctccgttcctttttaattgtcacat 33491158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Original strand, 40139831 - 40139861
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  40139831 tactacctccgttcctttttaattgtcacat 40139861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Complemental strand, 41425886 - 41425856
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  41425886 tactacctccgttcctttttaattgtcacat 41425856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Original strand, 45101347 - 45101377
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  45101347 tactacctccgttcctttttaattgtcacat 45101377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Original strand, 51219082 - 51219112
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  51219082 tactacctccgttcctttttaattgtcacat 51219112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 614
Target Start/End: Original strand, 1201040 - 1201073
Alignment:
Q  581 tattactacctccgttcctttttaattgtcacat 614  Q
    ||||||| ||||||||||||||||||||||||||    
T  1201040 tattactccctccgttcctttttaattgtcacat 1201073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 580 - 609
Target Start/End: Original strand, 13158424 - 13158453
Alignment:
Q  580 ttattactacctccgttcctttttaattgt 609  Q
    ||||||||||||||||||||||||||||||    
T  13158424 ttattactacctccgttcctttttaattgt 13158453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 582 - 614
Target Start/End: Original strand, 2642688 - 2642720
Alignment:
Q  582 attactacctccgttcctttttaattgtcacat 614  Q
    |||||| ||||||||||||||||||||||||||    
T  2642688 attacttcctccgttcctttttaattgtcacat 2642720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 580 - 612
Target Start/End: Complemental strand, 2642963 - 2642931
Alignment:
Q  580 ttattactacctccgttcctttttaattgtcac 612  Q
    |||||||| ||||||||||||||||||||||||    
T  2642963 ttattactccctccgttcctttttaattgtcac 2642931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 582 - 614
Target Start/End: Original strand, 34266427 - 34266459
Alignment:
Q  582 attactacctccgttcctttttaattgtcacat 614  Q
    ||||||||||||||||||||||||| |||||||    
T  34266427 attactacctccgttcctttttaatcgtcacat 34266459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 582 - 614
Target Start/End: Complemental strand, 36234623 - 36234591
Alignment:
Q  582 attactacctccgttcctttttaattgtcacat 614  Q
    |||||||| ||||||||||||||||||||||||    
T  36234623 attactacatccgttcctttttaattgtcacat 36234591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 612
Target Start/End: Original strand, 41351183 - 41351211
Alignment:
Q  584 tactacctccgttcctttttaattgtcac 612  Q
    |||||||||||||||||||||||||||||    
T  41351183 tactacctccgttcctttttaattgtcac 41351211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 582 - 614
Target Start/End: Complemental strand, 54106522 - 54106490
Alignment:
Q  582 attactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||| ||||    
T  54106522 attactacctccgttcctttttaattgttacat 54106490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 614
Target Start/End: Complemental strand, 8411 - 8381
Alignment:
Q  584 tactacctccgttcctttttaattgtcacat 614  Q
    |||||||||||||||||||||||||||||||    
T  8411 tactacctccgttcctttttaattgtcacat 8381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 585 - 614
Target Start/End: Complemental strand, 4770 - 4741
Alignment:
Q  585 actacctccgttcctttttaattgtcacat 614  Q
    ||||||||||||||||||||||||||||||    
T  4770 actacctccgttcctttttaattgtcacat 4741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 580 - 609
Target Start/End: Complemental strand, 148564 - 148535
Alignment:
Q  580 ttattactacctccgttcctttttaattgt 609  Q
    ||||||||||||||||||||||||||||||    
T  148564 ttattactacctccgttcctttttaattgt 148535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 612
Target Start/End: Original strand, 147111 - 147139
Alignment:
Q  584 tactacctccgttcctttttaattgtcac 612  Q
    |||||||||||||||||||||||||||||    
T  147111 tactacctccgttcctttttaattgtcac 147139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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