View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21622_low_7 (Length: 564)
Name: NF21622_low_7
Description: NF21622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21622_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 20 - 552
Target Start/End: Complemental strand, 30506981 - 30506440
Alignment:
| Q |
20 |
cttgctgccccattttaatgttttatcgtaattcgagtttaataaaaagtgcaacggaccaatttt----------ggctaaaaaacacttannnnnnnn |
109 |
Q |
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| T |
30506981 |
cttgctgccccgttttaatgttttatcgtaattcaagtttaataaaaagtgcaacggaccaattttacccaattttggctaaaaaacacttatttttgtt |
30506882 |
T |
|
| Q |
110 |
nnnngtgtgttaaatac--tttaaagctttaaatggcatgtggtgttaaatactagttctagctttcacacgatcctgttttatttagtgcattcgattc |
207 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30506881 |
tttcgtgtgttaaatacattttaaagctttaaatggcatgtggtgttaaatactagttctagctttcacacgatcctgttttatttagtgcattcgattc |
30506782 |
T |
|
| Q |
208 |
taaccatagtgcattattcttatataataaacgccataagaacgattaggtctcactttgtacaactttaattaagaggaatgttattttaacaattatt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30506781 |
taaccatagtgcattattcttatataataaacgccatacggccgactaggtctcactttgtacaactttaattaagaggaatgttattttaacaattatt |
30506682 |
T |
|
| Q |
308 |
tgttgggaatacctcttagagaaataaaatacataaagaaatttggttattaacaatataatgaccaaagcaatagagagtgaatataaaatatgagtat |
407 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| || | |||||| ||||| |||||||||||||||| ||||||| ||||| |
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| T |
30506681 |
tgttgggaatacctcttagagaactaaaatacataaagaaatttggttattgacgacataatggccaaaacaatagagagtgaatacaaaatataagtat |
30506582 |
T |
|
| Q |
408 |
aaaagagaaaattgttacaaaagttgtnnnnnnntaattgtttaaatatcatttttc-ttaattaatggaggagtaaaatgattgtcaattcttagtgtg |
506 |
Q |
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| T |
30506581 |
aaaagagaaaattgt----caagttgtaaaaaaatagttatttaaatatcatttttctttaattaatggaggagtgaaatgatcgtcaactcttagtgtg |
30506486 |
T |
|
| Q |
507 |
acatattcgtcagctcaaaatcgatggcatattttataccattcat |
552 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30506485 |
acatattcgtcagctcaaaatcgatggcatattttataccattcat |
30506440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 397 - 434
Target Start/End: Complemental strand, 10731612 - 10731575
Alignment:
| Q |
397 |
aatatgagtataaaagagaaaattgttacaaaagttgt |
434 |
Q |
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| T |
10731612 |
aatatgagtataaaagagaaagttgttacaaaagttgt |
10731575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 434
Target Start/End: Complemental strand, 48062123 - 48062086
Alignment:
| Q |
397 |
aatatgagtataaaagagaaaattgttacaaaagttgt |
434 |
Q |
| |
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||||||||||||| ||||||| |||||||||||||||| |
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| T |
48062123 |
aatatgagtataagagagaaagttgttacaaaagttgt |
48062086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 434
Target Start/End: Complemental strand, 42853643 - 42853606
Alignment:
| Q |
397 |
aatatgagtataaaagagaaaattgttacaaaagttgt |
434 |
Q |
| |
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||||||||||||| ||| |||||||||||||||||||| |
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| T |
42853643 |
aatatgagtataagagataaaattgttacaaaagttgt |
42853606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 434
Target Start/End: Original strand, 26501484 - 26501521
Alignment:
| Q |
397 |
aatatgagtataaaagagaaaattgttacaaaagttgt |
434 |
Q |
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||||||||||| |||||||||||||| ||||||||||| |
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| T |
26501484 |
aatatgagtatgaaagagaaaattgtcacaaaagttgt |
26501521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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