View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21622_low_8 (Length: 551)
Name: NF21622_low_8
Description: NF21622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21622_low_8 |
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| [»] scaffold0581 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 162 - 537
Target Start/End: Complemental strand, 25617140 - 25616765
Alignment:
| Q |
162 |
aaaatcgatgcaaaagacggatgaaagcaatgtatttgactcacttgctatgcttaagctaggttcaaatgtgtgaggtgcaaaaaagatgttatgatct |
261 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25617140 |
aaaatcgatgcaaaaaacggataaaagcaatgtatttgactcacttgctatgcttaagctaggttcaaatgtgtgaggtgcaaaaaagatgttatgatct |
25617041 |
T |
|
| Q |
262 |
tatcaacctcattttggacacaaatcatactgtaaaagtgacaatgatgatgattttatagatcagaaaccattttactacccacactacaatagagtat |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25617040 |
tatcaacctcattttggacacaaatcatactgtaaaagtgacaatgatgatgattttatagatcagaaaccattttactacccacactacaatagagtat |
25616941 |
T |
|
| Q |
362 |
tcaagtatgatcaaacactccatagagagttatagtattgttaaagcttatttgggattataatcatgttgataagataaataatatcattgttaggcct |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25616940 |
tcaagtatgatcaaacactccatagagagttatagtattgttaaagcttatttgggattataatcatgttgataagataaataatatcattgttaggcct |
25616841 |
T |
|
| Q |
462 |
tgccgagagatagttttaggtttttggaagcattcgtgcaataaactcatttatatctattaactaattggaattt |
537 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25616840 |
tgccgagagatagttttaggtttttggaagcattcgtgcaataaactcatttatatctattaactaattggaattt |
25616765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 25616196 - 25616342
Alignment:
| Q |
18 |
cttggttttcacatatattggagaaaacctattcaatgtggaaatttatggcaagaatggcttagagaaaccatgcttcaagaaaaagcaagaagctgtt |
117 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25616196 |
cttggtcttcacatatattggagaaaacctattcaatgtggaaatttatggcaagaatggcttagagaaaccatgcttcaagaaaaagcaagaagtcgtt |
25616295 |
T |
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| Q |
118 |
gcagccccaattgtggccaagagaaagaggggtagaccaagaagaaa |
164 |
Q |
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| T |
25616296 |
gcagccccaattgtggccaagagaaagaggggtagaccaagaagaaa |
25616342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 332
Target Start/End: Complemental strand, 13299090 - 13299015
Alignment:
| Q |
257 |
gatcttatcaacctcattttggacacaaatcatactgtaaaagtgacaatgatgatgattttatagatcagaaacc |
332 |
Q |
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| T |
13299090 |
gatcttatcaagctctttgtgggcacaaagcatactgcaaaagtgacagcgatggtgattttaaagatcagaaacc |
13299015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 345
Target Start/End: Complemental strand, 13261254 - 13261127
Alignment:
| Q |
217 |
aagctaggttcaaatgtgtgaggtgcaaaaaagatgttatgatcttatcaacctcattttggacacaaatcatactgtaaaagtgacaatgatgatgatt |
316 |
Q |
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|||| |||||||| |||| ||||||| |||| ||||| ||||||||||| ||| | ||| |||| | |||||| ||||| |||||||||| ||||| |
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| T |
13261254 |
aagccaggttcaactgtgagaggtgcggaaaa-atgttccgatcttatcaagctcttggtgggcacagagtatactgcaaaagagacaatgatggtgatt |
13261156 |
T |
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| Q |
317 |
ttatagatcagaaaccattttactaccca |
345 |
Q |
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| T |
13261155 |
taatagatcagaaaccttttcactgccca |
13261127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0581 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: scaffold0581
Description:
Target: scaffold0581; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 162 - 537
Target Start/End: Original strand, 5775 - 6150
Alignment:
| Q |
162 |
aaaatcgatgcaaaagacggatgaaagcaatgtatttgactcacttgctatgcttaagctaggttcaaatgtgtgaggtgcaaaaaagatgttatgatct |
261 |
Q |
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||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5775 |
aaaatcgatgcaaaaaacagataaaagcaatgtatttgactcacttgctatgcttaagctaggttcaaatgtgtgaggtgcaaaaaagatgttatgatct |
5874 |
T |
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| Q |
262 |
tatcaacctcattttggacacaaatcatactgtaaaagtgacaatgatgatgattttatagatcagaaaccattttactacccacactacaatagagtat |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5875 |
tatcaacctcattttggacacaaatcatactgtaaaagtgacaataatgatgattttatagatcagaaaccattttactacccacactacaatagagtat |
5974 |
T |
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| Q |
362 |
tcaagtatgatcaaacactccatagagagttatagtattgttaaagcttatttgggattataatcatgttgataagataaataatatcattgttaggcct |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5975 |
tcaagtatgatcaaacactccatagagagttatagtattgttaaagcttatttgggattataatcatgttgataagataaataatatcattgttaggcct |
6074 |
T |
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| Q |
462 |
tgccgagagatagttttaggtttttggaagcattcgtgcaataaactcatttatatctattaactaattggaattt |
537 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6075 |
tgccgagagatagttttaggtttttggaagcattcgtgcaataaactcatttatatctattaactaattggaattt |
6150 |
T |
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