View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21623_high_10 (Length: 352)
Name: NF21623_high_10
Description: NF21623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21623_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 1093013 - 1092677
Alignment:
| Q |
1 |
atttccatcttcccagtatggaacatgcgtggaatcttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1093013 |
atttccatcttcccagtatggaacatgcgtggaattttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcactt |
1092914 |
T |
|
| Q |
101 |
cagcttctctatcataagtggaattagtggtttcctctaattggtttgtgtttttcaccaccatgttgagagggagaaacaacaccagaatagaagtgta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1092913 |
cagcttctctatcataagtggaattagtggtttcctctaattggtttgtgtttttcaccaccatgttgagagggagaaacaacaccagaatggaagtgta |
1092814 |
T |
|
| Q |
201 |
ttatgactctaacaaagcatggaattactacctatagaattggacaggagagaacattaaaatagactgggcaaagaagaccaatgtattaaaattacac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1092813 |
ttatgactctaacaaagcatggaattactacctatagaattggacaggagagaacattaaaatagactgggcaaagaagaccaatgtattaaaattacac |
1092714 |
T |
|
| Q |
301 |
aaatagtaaagaaataaatgtgattgttttgtctctg |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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| T |
1092713 |
aaatagtaaagaaataaatgtgattgttttgtctctg |
1092677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 25225067 - 25225169
Alignment:
| Q |
22 |
aacatgcgtggaatcttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttcagcttctctatcataagtgg |
121 |
Q |
| |
|
|||||||| || ||||| | ||||||| ||||| | |||| | ||||| | ||| |||||||||||||||||||||||| | | ||||||||| |||| |
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| T |
25225067 |
aacatgcgcgggatctttgtcaccccacgctccataagacctctaacaccaagtttcgaatcatcaaaagctttcacttcaacatttctatcatatgtgg |
25225166 |
T |
|
| Q |
122 |
aat |
124 |
Q |
| |
|
||| |
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|
| T |
25225167 |
aat |
25225169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 26168315 - 26168213
Alignment:
| Q |
22 |
aacatgcgtggaatcttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttcagcttctctatcataagtgg |
121 |
Q |
| |
|
||||||||||| ||||| | ||||||| ||||| | |||| | ||||| | |||||||||||||||| |||||| |||| | | ||||||||| |||| |
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| T |
26168315 |
aacatgcgtgggatctttgtcaccccacgctccataagacctcttacaccaagttttgaatcatcaaaaactttcaattcatcatttctatcatatgtgg |
26168216 |
T |
|
| Q |
122 |
aat |
124 |
Q |
| |
|
||| |
|
|
| T |
26168215 |
aat |
26168213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 26395926 - 26395846
Alignment:
| Q |
22 |
aacatgcgtggaatcttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttca |
102 |
Q |
| |
|
||||||||||| ||||| | |||||| |||||| | |||| | ||||| |||||||| || |||||||||||||||||| |
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|
| T |
26395926 |
aacatgcgtgggatctttgttaccccactctccacaagacctcttacaccaacttttgattcttcaaaagctttcacttca |
26395846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 29462749 - 29462555
Alignment:
| Q |
1 |
atttccatcttcccagtatggaacatgcgtggaatcttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcactt |
100 |
Q |
| |
|
||||||| ||||| ||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| |
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|
| T |
29462749 |
atttccaacttcctagtgtagaacatgcgtggaatctttgacaccccagaatccaccaaacctttgacaccaacttttgaatcatcaaaagctttaactt |
29462650 |
T |
|
| Q |
101 |
cagcttctctatcataagtggaattagtggtttcctctaattggtttgtgtttttcaccaccatgttgagagggagaaacaacaccagaatagaagt |
197 |
Q |
| |
|
| |||||||||||||||||| ||| | ||| ||||| ||||||||||| ||||| |||||||| |||| ||| |||||||||||||||| |||| |
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|
| T |
29462649 |
cggcttctctatcataagtgaaatcactggattcctttaattggtttgagttttctaccaccatattgatagg--caaacaacaccagaataaaagt |
29462555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 19844488 - 19844333
Alignment:
| Q |
17 |
tatggaacatgcgtggaatcttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttcagcttctctatcata |
116 |
Q |
| |
|
|||||||||| |||| ||||||||||| || ||||||||||||||| | ||||| ||||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
19844488 |
tatggaacatctgtgggatcttcgacactccggactccaccaaacctctcacaccagcttttgaatcatcaaaagctttcacttcattgtatctatcata |
19844389 |
T |
|
| Q |
117 |
agtggaattagtggtttcctctaattggtttgtgtttttcaccaccatgttgagag |
172 |
Q |
| |
|
|||||||||||||| || |||| |||||||| |||||| |||||||| ||||||| |
|
|
| T |
19844388 |
agtggaattagtggatttttctacttggtttgagttttttaccaccatattgagag |
19844333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 19890346 - 19890171
Alignment:
| Q |
16 |
gtatggaacatgcgtggaatcttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttcagcttctctatcat |
115 |
Q |
| |
|
||||| || ||||| || ||||| ||||||||| ||||||||||||| ||||||| ||||||||||||||||| ||||||||| | || |||||||| |
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| T |
19890346 |
gtatgaaaaatgcgcgggatctttgacaccccatgctccaccaaacctctgacaccagcttttgaatcatcaaaatttttcacttctgtttttctatcat |
19890247 |
T |
|
| Q |
116 |
aagtggaattagtggtttcctctaattggtttgtgtttttcaccaccatgttgagagggagaaacaacaccagaatag |
193 |
Q |
| |
|
||||||||||||| | ||||||||| || ||||||||||| |||||||| |||||||| ||||||||||| ||||| |
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|
| T |
19890246 |
aagtggaattagtagattcctctaactgatttgtgttttttaccaccatattgagagg--aaaacaacaccaaaatag |
19890171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 4 - 193
Target Start/End: Original strand, 49465435 - 49465622
Alignment:
| Q |
4 |
tccatcttcccagtatggaacatgcgtggaatcttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttcag |
103 |
Q |
| |
|
|||| |||||| | |||||| | |||||| ||||| || ||||||||||| |||||||| ||||| ||| || |||||||||||||||||||||||||| |
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|
| T |
49465435 |
tccaacttcccggcatggaaaaagcgtgggatctttgaaaccccagactcaaccaaaccattgacgcctgctcgtgaatcatcaaaagctttcacttcag |
49465534 |
T |
|
| Q |
104 |
cttctctatcataagtggaattagtggtttcctctaattggtttgtgtttttcaccaccatgttgagagggagaaacaacaccagaatag |
193 |
Q |
| |
|
||| ||||||||||||||||| ||||| |||||||||||| ||||||||||| ||||||||||||||| | ||||||| |||||||||| |
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|
| T |
49465535 |
cttttctatcataagtggaatcagtggcttcctctaattgatttgtgttttttaccaccatgttgagaag--gaaacaaaaccagaatag |
49465622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 8349072 - 8348970
Alignment:
| Q |
22 |
aacatgcgtggaatcttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttcagcttctctatcataagtgg |
121 |
Q |
| |
|
||||||||||| ||||| | |||||| ||||| | |||| | ||||| | |||||||||||||||||||||||||||||| | ||||||||| |||| |
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|
| T |
8349072 |
aacatgcgtgggatctttgttaccccacgctccataagacctctaacaccaagttttgaatcatcaaaagctttcacttcagcatttctatcatatgtgg |
8348973 |
T |
|
| Q |
122 |
aat |
124 |
Q |
| |
|
||| |
|
|
| T |
8348972 |
aat |
8348970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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