View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21623_high_24 (Length: 211)

Name: NF21623_high_24
Description: NF21623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21623_high_24
NF21623_high_24
[»] chr7 (3 HSPs)
chr7 (1-103)||(46609181-46609283)
chr7 (120-197)||(46609352-46609429)
chr7 (45-103)||(2012771-2012829)
[»] chr5 (6 HSPs)
chr5 (35-96)||(7097342-7097403)
chr5 (44-95)||(12242016-12242067)
chr5 (49-96)||(12521446-12521493)
chr5 (46-96)||(16945123-16945173)
chr5 (44-96)||(20982273-20982325)
chr5 (47-95)||(41052771-41052819)
[»] chr4 (2 HSPs)
chr4 (44-96)||(33640988-33641040)
chr4 (69-97)||(4243219-4243247)
[»] chr8 (1 HSPs)
chr8 (29-95)||(6950217-6950283)
[»] chr1 (2 HSPs)
chr1 (57-95)||(17420084-17420122)
chr1 (47-95)||(36653329-36653377)
[»] chr6 (1 HSPs)
chr6 (40-96)||(2027938-2027994)
[»] chr3 (1 HSPs)
chr3 (44-96)||(23785133-23785185)


Alignment Details
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 46609181 - 46609283
Alignment:
Q  1 ttgactttgttttgttttttcttatttattatcaaaatagctaatatgataagcatttatcctacaatcacttaattaagctgtttatccaaacagatcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46609181 ttgactttgttttgttttttcttatttattatcaaaatagctaatatgataagcatttatcctacaatcacttaattaagctgtttatccaaacagatcc 46609280  T
Q  101 tat 103  Q
    |||    
T  46609281 tat 46609283  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 46609352 - 46609429
Alignment:
Q  120 aaaaccatacagatcagcagcaagttttcaataaccagtggtaagctagtaatttcgaatacaaatctacgatgttat 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  46609352 aaaaccatacagatcagcagcaagttttcaataaccagtggtaagctagtaatttcgaatacaaatttacgatgttat 46609429  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 2012771 - 2012829
Alignment:
Q  45 tatgataagcatttatcctacaatcacttaattaagctgtttatccaaacagatcctat 103  Q
    |||||||||||  ||| ||| || |||||||||||||| |||||||||||||| |||||    
T  2012771 tatgataagcacctatgctataagcacttaattaagctttttatccaaacagagcctat 2012829  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 7097403 - 7097342
Alignment:
Q  35 aaatagctaatatgataagcatttatcctacaatcacttaattaagctgtttatccaaacag 96  Q
    |||||||| ||||||||||||||||| ||| || ||  ||||||||||||||| ||||||||    
T  7097403 aaatagcttatatgataagcatttatgctataagcatataattaagctgtttagccaaacag 7097342  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 12242016 - 12242067
Alignment:
Q  44 atatgataagcatttatcctacaatcacttaattaagctgtttatccaaaca 95  Q
    |||||||||||| |||  ||| ||||||||||||||| ||||||||||||||    
T  12242016 atatgataagcacttaagctagaatcacttaattaagttgtttatccaaaca 12242067  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 12521493 - 12521446
Alignment:
Q  49 ataagcatttatcctacaatcacttaattaagctgtttatccaaacag 96  Q
    ||||| |||||| ||| || ||||||||||||||||||||||||||||    
T  12521493 ataagaatttatgctaaaagcacttaattaagctgtttatccaaacag 12521446  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 16945123 - 16945173
Alignment:
Q  46 atgataagcatttatcctacaatcacttaattaagctgtttatccaaacag 96  Q
    ||||||||| ||||| ||| || |||||||||| |||||||||||||||||    
T  16945123 atgataagcttttatgctataaacacttaattaggctgtttatccaaacag 16945173  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 20982273 - 20982325
Alignment:
Q  44 atatgataagcatttatcctacaatcacttaattaagctgtttatccaaacag 96  Q
    |||||||||||| |||| ||| || |||||||| ||| |||||||||||||||    
T  20982273 atatgataagcacttatgctataagcacttaatgaagttgtttatccaaacag 20982325  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 41052819 - 41052771
Alignment:
Q  47 tgataagcatttatcctacaatcacttaattaagctgtttatccaaaca 95  Q
    |||||||| ||||| |||||| |||||||||||  ||||||||||||||    
T  41052819 tgataagcgtttatgctacaagcacttaattaaattgtttatccaaaca 41052771  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 33641040 - 33640988
Alignment:
Q  44 atatgataagcatttatcctacaatcacttaattaagctgtttatccaaacag 96  Q
    |||||||||||  |||| ||| || ||||||||||||||||||||||||||||    
T  33641040 atatgataagcgattattctataagcacttaattaagctgtttatccaaacag 33640988  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 97
Target Start/End: Complemental strand, 4243247 - 4243219
Alignment:
Q  69 cacttaattaagctgtttatccaaacaga 97  Q
    |||||||||||||||||||||||||||||    
T  4243247 cacttaattaagctgtttatccaaacaga 4243219  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 6950283 - 6950217
Alignment:
Q  29 ttatcaaaatagctaatatgataagcatttatcctacaatcacttaattaagctgtttatccaaaca 95  Q
    |||| |||| |||| ||||||||||| ||||| ||| || |||||||||||| |||||||| |||||    
T  6950283 ttataaaaacagcttatatgataagcgtttatgctataagcacttaattaagttgtttatctaaaca 6950217  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 17420122 - 17420084
Alignment:
Q  57 ttatcctacaatcacttaattaagctgtttatccaaaca 95  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  17420122 ttatactataatcacttaattaagctgtttatccaaaca 17420084  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 36653377 - 36653329
Alignment:
Q  47 tgataagcatttatcctacaatcacttaattaagctgtttatccaaaca 95  Q
    |||||||| ||||| ||| ||| ||||||||||| ||||||||||||||    
T  36653377 tgataagcgtttatgctataattacttaattaagttgtttatccaaaca 36653329  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 2027938 - 2027994
Alignment:
Q  40 gctaatatgataagcatttatcctacaatcacttaattaagctgtttatccaaacag 96  Q
    |||||||||||||||||||||  || || | |||||| || ||||||||||||||||    
T  2027938 gctaatatgataagcatttatgatataagcgcttaatgaaactgtttatccaaacag 2027994  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 23785185 - 23785133
Alignment:
Q  44 atatgataagcatttatcctacaatcacttaattaagctgtttatccaaacag 96  Q
    ||||||||| ||||||| ||| || |||||||||||| ||||||| |||||||    
T  23785185 atatgataaacatttatgctataagcacttaattaagttgtttatgcaaacag 23785133  T

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