View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21623_high_7 (Length: 450)
Name: NF21623_high_7
Description: NF21623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21623_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 33127746 - 33127305
Alignment:
| Q |
1 |
tcttacatgtttcctactcctttggctcttcatcgtttggatccaagcgaacatgttgtcccttaaccctat---ataaaagggcaattctatgactggt |
97 |
Q |
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| T |
33127746 |
tcttacatgtttcctactcctttggctcttcatcgtttggatccaagcgaacatgttgtcccttaaccctattatataaaagggcaattttatgactgat |
33127647 |
T |
|
| Q |
98 |
tttttgtacttcacgatctggaagattcacttctaggttgttgttgttgatctatttattgcaattcgctactactggtttgtgttttcgttgtgctact |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33127646 |
tttttgtacttcacgatctggaagattcacttctaggttgttgttgttgatctatttattgcaattcgctactactggtttgtgttttcgttgtgctact |
33127547 |
T |
|
| Q |
198 |
gctagcattgggttgttgttggttcgagttcatcgtgaggtcgcacaccttttttgttatttagttttgcactcgtattacgagttcaatggattgtgct |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
33127546 |
gctagcattgggttgttgttggttcgagttcatcgtgaggtcacacaccttttttgttatttggttttgcactcgtattacgagttcgatggattgtgct |
33127447 |
T |
|
| Q |
298 |
aatgcgttttagttgcttcgtgtaccaactttgatggaccgtcgaaattggcggtagtttttatcccattcgaggctaatattctatttttaacactctt |
397 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33127446 |
aatgtgttttagttgcttcgtgtaccaactttgatggaccgtcggaattggcggtagtttttatcccattcgaggctaatattctatttttaacactctt |
33127347 |
T |
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| Q |
398 |
tagggttgatttcataccatttttggttgttcgtaatttcat |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
33127346 |
tagggttgatttcataccatttttggttgttcgtaatttcat |
33127305 |
T |
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