View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21623_low_1 (Length: 642)
Name: NF21623_low_1
Description: NF21623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21623_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 316 - 624
Target Start/End: Complemental strand, 32809519 - 32809214
Alignment:
| Q |
316 |
tagtgtatctggatggaggtcaaggtcacgtagttaaaggttttgttgttggaactcttgttgtagtaggacttgttatgcttatcgcagctacttttac |
415 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
32809519 |
tagtgtacctggatggaggtcaaggtcacgtagttaaaggttttgttgttggaactcttgttgtagtaggactttttatgcttattgcagctacttttac |
32809420 |
T |
|
| Q |
416 |
taatgcaacttatcagagacttcgacttgataacaatgataatgataataatgaaagacctagttctgtggcgctgtgcattgtggaggaacgtctgctg |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
32809419 |
taatgcaacttatcagagacttcgacttgataacaatgataatgataataatgaaaaacctagttctgtggcgctgtgcattgtggaggaacgtctggtg |
32809320 |
T |
|
| Q |
516 |
gatcgccttcgccgggaattgtctattagttgtagggtcgacttccagatccttcttctatgcctttgtacaatttgcctccaaatttgatgcctacaat |
615 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32809319 |
gatcgccttcgccggtaattgtctattagttgtagggtggacttccagacc---cttctatgcttttgtacaatttgcctccaaatttgatgcctacaat |
32809223 |
T |
|
| Q |
616 |
ggagggcat |
624 |
Q |
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||||||||| |
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| T |
32809222 |
ggagggcat |
32809214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 317 - 623
Target Start/End: Complemental strand, 32802956 - 32802645
Alignment:
| Q |
317 |
agtgtatctggatggaggtcaaggtcacgtagttaaaggttttgttgttggaactcttgttgtagtaggacttgttatgcttatcgcagctacttttact |
416 |
Q |
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| T |
32802956 |
agtgtacctggctggaggtcagggccaggttgttggaggttgtgttgttggaactcttgttgcagttggacctgttatgcttattgccgctacttttact |
32802857 |
T |
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| Q |
417 |
aatgcaacttatcagagacttcgacttgataacaatgataatgataataatgaaagacctagttctg-tggcgctgtgcattgtggaggaacgt---ctg |
512 |
Q |
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| T |
32802856 |
aatgctacttatgagagacttccacttgatgacgatgataatgataataatgaagggcctaattctgcaggcggtgtgcaaggtggaggagcgtcgactg |
32802757 |
T |
|
| Q |
513 |
ctggatcgccttcgccgggaattgtctattagttgtagggtcgacttccagatccttcttctatgcctttgtacaatttgcctccaaatttgatgcct-a |
611 |
Q |
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|||||||||| | || ||||||| || ||||| ||||| | ||||||||||||||||| ||||||||||| |||||||| ||||||||| ||||| | |
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| T |
32802756 |
gtggatcgcctccaccaggaattggtcatcagttgcagggtgggcttccagatccttcttccatgcctttgtataatttgccaccaaatttgttgcctaa |
32802657 |
T |
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| Q |
612 |
caatggagggca |
623 |
Q |
| |
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||||||||||| |
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| T |
32802656 |
taatggagggca |
32802645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 32809663 - 32809751
Alignment:
| Q |
1 |
aaaaaagcaccacattgacgccttcttgcgaattgtgctatgtttttggatccaggtggtcttcctcttggtcttcggttaccaatttc |
89 |
Q |
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| T |
32809663 |
aaaaaagcaccacattgacgccttcttgcgaattgtgctatgtttttggatccaggtggtcttcctcttggtcttcggttaccaatttc |
32809751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 243 - 322
Target Start/End: Original strand, 32810666 - 32810745
Alignment:
| Q |
243 |
ctagagttacatatatttaaaacatgatagagaactaaatgacagaggatgcttagttgaattaataaattattagtgta |
322 |
Q |
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| T |
32810666 |
ctagagttacatatatttaaaacatgatagagaactaaatgacagaggatgcttagttgaattaataaattattagtgta |
32810745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 32810527 - 32810599
Alignment:
| Q |
104 |
aaccttgtaagttgtaaccatttcagctactagcacactatccaacccaacaaacattgttaccggttggttg |
176 |
Q |
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| T |
32810527 |
aaccttgtaagttgtaaccatttcagctactagcacactatccaacccaacaaacattgttaccggttggttg |
32810599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 41 - 92
Target Start/End: Original strand, 32803243 - 32803294
Alignment:
| Q |
41 |
tgtttttggatccaggtggtcttcctcttggtcttcggttaccaatttcgac |
92 |
Q |
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| T |
32803243 |
tgtttttggatccaggtggtcttcctcttggtcttcggttaccaacttcgac |
32803294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 16578652 - 16578604
Alignment:
| Q |
41 |
tgtttttggatccaggtggtcttcctcttggtcttcggttaccaatttc |
89 |
Q |
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| T |
16578652 |
tgttttttgaaccgggtggtcttcctcttggtcttcggtttccaatttc |
16578604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 557 - 601
Target Start/End: Original strand, 16579204 - 16579248
Alignment:
| Q |
557 |
cttccagatccttcttctatgcctttgtacaatttgcctccaaat |
601 |
Q |
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| T |
16579204 |
cttccagatccatcttctatgcctttgtataatttgccaccaaat |
16579248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 76
Target Start/End: Original strand, 3332399 - 3332434
Alignment:
| Q |
41 |
tgtttttggatccaggtggtcttcctcttggtcttc |
76 |
Q |
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| T |
3332399 |
tgtttttggatccagctggtcttcctcttggtcttc |
3332434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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