View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21623_low_11 (Length: 352)
Name: NF21623_low_11
Description: NF21623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21623_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 9 - 336
Target Start/End: Original strand, 18677353 - 18677677
Alignment:
| Q |
9 |
atcatcactctcatcacaagtccctactttcatttgttctcattcacactcgtacgtatatatgcgaatatcattttcataatcccctcatcttctgcct |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18677353 |
atcatcactctcatcacaagtccctactttcatttgttctcattcacactcggacgtatatatgcgaatatcattttcataatcccctcatcttctgcct |
18677452 |
T |
|
| Q |
109 |
cttcaatcttcacaccccccatccttcctcttcacaccccctctctcctctttcaatggcttccattcccgttttctctccattcactcccatgaaacaa |
208 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18677453 |
cttcaatcttcacaccccccctcattcctcttcacaccccctctctcctctttcaatggcttccattcccgttttctctccattcactcccatgaaacaa |
18677552 |
T |
|
| Q |
209 |
aagcataaacctctatctttccaacctctcttacgcacttgctcttccttttcccttcaaagagtctcaaagggttgttcaatatcgagttttgcttgct |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
18677553 |
aagcataaacctctatctttccaacctctcttacgcactcgctcttccttttcccttcaaagggtctcaaagggttgttcaatatcaagttttgcttgct |
18677652 |
T |
|
| Q |
309 |
caacttcttctaagtttcatggtggaag |
336 |
Q |
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||| |||||||| ||||||||||||| |
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| T |
18677653 |
caa---cttctaagcttcatggtggaag |
18677677 |
T |
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