View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21623_low_12 (Length: 348)
Name: NF21623_low_12
Description: NF21623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21623_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 57 - 330
Target Start/End: Original strand, 1093273 - 1093546
Alignment:
| Q |
57 |
atgtattactctaatgtactcttgtttagtggaaaacctgctaattggagagatacatttggttttgctattgctcctcattcattcaaaccagatgaag |
156 |
Q |
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| T |
1093273 |
atgtattactctaatgtactcttgtttagtggaaaacctgctaattggagagatacatttggttttgctattgctcctcattcattcaaaccagatgaag |
1093372 |
T |
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| Q |
157 |
tgccaccaatatgcaggtaatgaactcaatattaatttggattctcactctcaaaatcataatcaaatttatttgtatatctaggcatttatttatgggt |
256 |
Q |
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| T |
1093373 |
tgccaccaatatgcaggtaatgaactcaatattaatttggattctcactctcaaaatcataatcaaatttatttgtatatctaggcatttatttatgggt |
1093472 |
T |
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| Q |
257 |
tatatatgtttctaatcttaaaaagtagatagatgattacttttatgataagcatgggtgatggtccctaaact |
330 |
Q |
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| T |
1093473 |
tatatatgtttctaatcttaaaaagtagatagatgataacttttatgataagcatgggtcatggtccctaaact |
1093546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 1092786 - 1092723
Alignment:
| Q |
1 |
ctacctatagaattggacaggagagaacattaaaatagactgggcaaagaagaccaatgtatta |
64 |
Q |
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| T |
1092786 |
ctacctatagaattggacaggagagaacattaaaatagactgggcaaagaagaccaatgtatta |
1092723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 57 - 301
Target Start/End: Complemental strand, 49465172 - 49464928
Alignment:
| Q |
57 |
atgtattactctaatgtactcttgtttagtggaaaacctgctaattggagagatacatttggttttgctattgctcctcattcattcaaaccagatgaag |
156 |
Q |
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| T |
49465172 |
atgtattattctaatgtacacttgtttagtgggcaagctgctaattggagagatacatttggttttgctgttgctcctcatccattcaaacccgaggaag |
49465073 |
T |
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| Q |
157 |
tgccaccaatatgcaggtaatgaactcaatattaatttggattctcactctcaaaatcataatcaaatttatttgtatatctaggcatttatttatgggt |
256 |
Q |
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| T |
49465072 |
tgccaccaatatgcaggtaatgaactcaatattaatttggattctcactctccaaatcataatcatatttttctcactatctaagcatttatttatgggt |
49464973 |
T |
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| Q |
257 |
tatatatgtttctaatcttaaaaagtagatagatgattactttta |
301 |
Q |
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| T |
49464972 |
tataaatgtcttttatcttaaaaaatagataaatgtttaccttta |
49464928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 59 - 239
Target Start/End: Original strand, 29463011 - 29463191
Alignment:
| Q |
59 |
gtattactctaatgtactcttgtttagtggaaaacctgctaattggagagatacatttggttttgctattgctcctcattcattcaaaccagatgaagtg |
158 |
Q |
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| T |
29463011 |
gtattactctaatgtacgcttgtttaatggacaaggtgctaattggagagatacatttggttttgctattgctcctgatccattcaatccagatgaagtg |
29463110 |
T |
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| Q |
159 |
ccaccaatatgcaggtaatgaactcaatattaatttggattctcactctcaaaatcataatcaaatttatttgtatatcta |
239 |
Q |
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| T |
29463111 |
ccacaaatatgcaggtaataaactcaatattaatttggattctcactctctaaatcataatcagatttaattgtatatcta |
29463191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 19890641 - 19890741
Alignment:
| Q |
77 |
cttgtttagtggaaaacctgctaattggagagatacatttggttttgctattgctcctcattcattcaaaccagatgaagtgccaccaatatgcaggtaa |
176 |
Q |
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|||||||||||| || |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||| | ||| | |||||||||||| |
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| T |
19890641 |
cttgtttagtggccaagctgctaattggagagatacaattggttttgctgttgctcctcatccattcaaaccaaatgaactaccatccatatgcaggtaa |
19890740 |
T |
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| Q |
177 |
t |
177 |
Q |
| |
|
| |
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| T |
19890741 |
t |
19890741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 19844801 - 19844885
Alignment:
| Q |
94 |
ctgctaattggagagatacatttggttttgctattgctcctcattcattcaaaccagatgaagtgccaccaatatgcaggtaatg |
178 |
Q |
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| T |
19844801 |
ctgctgattggagagatacagttggattcgttgttgctcctgatccattcaaaccagaagaaataccaccaatatgcaggtaatg |
19844885 |
T |
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