View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21623_low_13 (Length: 322)
Name: NF21623_low_13
Description: NF21623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21623_low_13 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 11228 - 11514
Alignment:
| Q |
19 |
acaagcccatgcctcagtttctttactttctcccatgctttcttgtaattctgtttctaataacatggattctgcctcattatggcattgtagattaggt |
118 |
Q |
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| T |
11228 |
acaagcccatgcctcagtttctttactttctcccatgctttcttgtaattctgtttctaataacatggattctgcctctttatggcattgtagattaggt |
11327 |
T |
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| Q |
119 |
catatctctgacgctattcacaaatgtattgcttcaacttatccttttatttcttacaagaatcataataaaaatactccttgtgatgtttgtcattttt |
218 |
Q |
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| T |
11328 |
catatctctgacgctattcacaaatgtattgcttcaacttatccttttatttcttacaagaatcataataaaaatactccttgtgatgtttgtcattttt |
11427 |
T |
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| Q |
219 |
ccaaacaaagagttcttccttatcctaatagtgttactcattctaataacatttttgatttgttacatgctgatatatggggccctt |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11428 |
ccaaacaaagagttcttccttatcctaatagtgttactcattctaataacatttttgatttgttacatgctgatatatggggccctt |
11514 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 152
Target Start/End: Complemental strand, 22454768 - 22454726
Alignment:
| Q |
110 |
agattaggtcatatctctgacgctattcacaaatgtattgctt |
152 |
Q |
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| T |
22454768 |
agattaggtcatatctctgacgctattcacaaatgtattgctt |
22454726 |
T |
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