View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21623_low_14 (Length: 312)
Name: NF21623_low_14
Description: NF21623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21623_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 46439069 - 46439327
Alignment:
| Q |
1 |
aaactgaacaactttgaaaacaacattggatctctgaatgtgaagcttacacaagaaaatttgaaggaaatttctgatgcagttcccgttgaggaaattg |
100 |
Q |
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| T |
46439069 |
aaactgaagaactttgaaaacaacattggatctctgaatgtgaagcttacacaagaaaatttgaaggaaatttctgatgcagttcccgttgaggaaattg |
46439168 |
T |
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| Q |
101 |
ctggggagcgagaatatgatagtatatcacaatatctttggaagtttgcaactacgccgccaaagtaattgcatagatagaactgtgcaattgtaatgaa |
200 |
Q |
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| T |
46439169 |
ctggggagcgagaatatgatagtatatcacaatatctttggaagtttgcaactacgccgccaaagtaattgcatagatagaactgtgcaactgtaatgaa |
46439268 |
T |
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| Q |
201 |
ttgagtgctgtgtttgtatttcactatgatgcttacctcaatgatataacttctctaca |
259 |
Q |
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| T |
46439269 |
ttgagtgttgtgtttgtatttcactatgatgtttacctcaatgaaataacttctctaca |
46439327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 5 - 190
Target Start/End: Original strand, 46433451 - 46433637
Alignment:
| Q |
5 |
tgaacaactttgaaaacaacattggatctctgaatgtgaagcttacacaagaaaatttgaaggaaatttctgatgcagttcccgttgaggaaattgctgg |
104 |
Q |
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| T |
46433451 |
tgaagaactttgaaaacaacattggatctctgattgtaaagcttacagaagaagatttgaaggaaatttctgatgctgttcctgttgcggaaatcgctgg |
46433550 |
T |
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| Q |
105 |
ggagcgagaatatgatagtatatcacaatatctttggaagtttgcaactacgccgccaaagt-aattgcatagatagaactgtgcaa |
190 |
Q |
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| T |
46433551 |
gaatctagaaaatcacagtttgtcgcaatatagttggaagtttgcaactacaccgccaaagtaaattgcatagagagaactgtgcaa |
46433637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 182
Target Start/End: Original strand, 46450084 - 46450256
Alignment:
| Q |
14 |
ttgaaaacaacattggatctctgaatgtgaagcttacacaagaaaatttgaaggaaatttctgatgcagttcccgttgaggaaattgctggggagcgaga |
113 |
Q |
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| T |
46450084 |
ttgaaaacagcattggatctctgatt-taaagcttacagaagaagatttgaaagaaatttctgatgcagttcctattgaggaaatcgctgggaatctaga |
46450182 |
T |
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| Q |
114 |
atatgatagtatatcacaatatctt-----tggaagtttgcaactacgccgccaaagtaattgcatagatagaa |
182 |
Q |
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| T |
46450183 |
aaatcacagtttatcacaatatagttggaatggaagtttgcaactatgccgacaaagttattgcatagagagaa |
46450256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 46439345 - 46439382
Alignment:
| Q |
256 |
tacatgggagaattgttatttcaagcctatcttcttgg |
293 |
Q |
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| T |
46439345 |
tacatgggagaattgttatttcaagcctatcttcttgg |
46439382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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