View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21623_low_16 (Length: 286)

Name: NF21623_low_16
Description: NF21623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21623_low_16
NF21623_low_16
[»] chr7 (1 HSPs)
chr7 (1-286)||(46608716-46609001)


Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 46609001 - 46608716
Alignment:
Q  1 ataagcttgtagttgttgtaggactttacatcggataaacctacattcagatgtagtgcactgaattacgtattaacttatttttcggtctgttgtgtta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  46609001 ataagcttgtagttgttgtaggactttacatcggataaacctacattcagatgtagtgcactgaattacgtattaagttatttttcggtctgttgtgtta 46608902  T
Q  101 tcattgtatggaattgaagcggtgaagttatccttgattcattttattgatcaactcgtggttaatttgtcatttcaggctagtgtaggaccttgtaaca 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46608901 tcattgtatggaattgaagcgatgaagttatccttgattcattttattgatcaactcgtggttaatttgtcatttcaggctagtgtaggaccttgtaaca 46608802  T
Q  201 tcccagaacccagttcatggaaaattgtggagcatagcaaatgggccaggtttgtttgttttaaccatgcatgttttttccccttt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46608801 tcccagaacccagttcatggaaaattgtggagcatagcaaatgggccaggtttgtttgttttaaccatgcatgttttttccccttt 46608716  T

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