View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21623_low_18 (Length: 279)
Name: NF21623_low_18
Description: NF21623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21623_low_18 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 21484103 - 21484390
Alignment:
| Q |
1 |
gatattcacttgttgcggtttattttcccgatcatcatgcactatcatcggaacttgt---------tgatatccgtcttgcacttgaacttgttgctct |
91 |
Q |
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| T |
21484103 |
gatattcacttgttgcggtttattttcccgatcatcatgcactatcatcggaacttgttgatgttgttgatatccgtcttgcacttgaacttgttgctct |
21484202 |
T |
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| Q |
92 |
tgtgtgaaatccactaaagggttttcatcttcattttgaaaaatcgaagcagggtcaaaaaattcattagcttctaaaagctccatgtaaccaaaagtat |
191 |
Q |
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| T |
21484203 |
tgagtgaaatccactaaagggttttcatcttcattttgaaaaatcgaagcagggtcaaaaaattcattagcttctaaaagctccatgtaaccaaaagtat |
21484302 |
T |
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| Q |
192 |
ccataatgttaacatcatccatgcaatcaccaccaccaacaacaacatcattgttagaaacaccaagatcttgttgctgttgctgaga |
279 |
Q |
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| T |
21484303 |
ccataatgttaacatcatccatgcaatcaccaccaccaacaacaacatcattgttagaaacaccaagatcttgttgctgttgttgaga |
21484390 |
T |
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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 26551531 - 26551591
Alignment:
| Q |
2 |
atattcacttgttgcggtttattttcccgatcatcatgcactatcatcggaacttgttgat |
62 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||||||||| | || |||||||| |
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| T |
26551531 |
atattcacttgttgtggtttattttccctttcatcatgcactatcattgaaatttgttgat |
26551591 |
T |
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