View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21623_low_2 (Length: 587)
Name: NF21623_low_2
Description: NF21623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21623_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 219 - 569
Target Start/End: Original strand, 1093196 - 1093546
Alignment:
| Q |
219 |
atggaattagtaagtttcacgaacaagatgctaatgtaagaaaagagttttatacgcgggatttgaacaaaaaagttatgtattactctaatgtactctt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1093196 |
atggaattagtaagtttcacgaacaagatgctaatgtaagaaaagatttttatacgcgggatttgaacaaaaaagttatgtattactctaatgtactctt |
1093295 |
T |
|
| Q |
319 |
gtttagtggaaaacctgctaattggagagatacatttggttttgctattgctcctcattcattcaaaccagatgaagtgccaccaatatgcaggtaatga |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1093296 |
gtttagtggaaaacctgctaattggagagatacatttggttttgctattgctcctcattcattcaaaccagatgaagtgccaccaatatgcaggtaatga |
1093395 |
T |
|
| Q |
419 |
actcaatattaatttggattctcactctcaaaatcataatcaaatttatttgtatatctaggcatttatttatgggttatatatgtttctaatcttaaaa |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1093396 |
actcaatattaatttggattctcactctcaaaatcataatcaaatttatttgtatatctaggcatttatttatgggttatatatgtttctaatcttaaaa |
1093495 |
T |
|
| Q |
519 |
agtagatagatgattacttttatgataagcatgggtgatggtccctaaact |
569 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1093496 |
agtagatagatgataacttttatgataagcatgggtcatggtccctaaact |
1093546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 1093013 - 1092787
Alignment:
| Q |
1 |
atttccatcttcccagtatggaacatgcgtggaatcttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1093013 |
atttccatcttcccagtatggaacatgcgtggaattttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcactt |
1092914 |
T |
|
| Q |
101 |
cagcttctctatcataagtggaattagtggtttcctctaattggtttgtgtttttcaccaccatgttgagagggagaaacaacaccagaatagaagtgta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1092913 |
cagcttctctatcataagtggaattagtggtttcctctaattggtttgtgtttttcaccaccatgttgagagggagaaacaacaccagaatggaagtgta |
1092814 |
T |
|
| Q |
201 |
ttatgactctaacaaagcatggaatta |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
1092813 |
ttatgactctaacaaagcatggaatta |
1092787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 25225067 - 25225169
Alignment:
| Q |
22 |
aacatgcgtggaatcttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttcagcttctctatcataagtgg |
121 |
Q |
| |
|
|||||||| || ||||| | ||||||| ||||| | |||| | ||||| | ||| |||||||||||||||||||||||| | | ||||||||| |||| |
|
|
| T |
25225067 |
aacatgcgcgggatctttgtcaccccacgctccataagacctctaacaccaagtttcgaatcatcaaaagctttcacttcaacatttctatcatatgtgg |
25225166 |
T |
|
| Q |
122 |
aat |
124 |
Q |
| |
|
||| |
|
|
| T |
25225167 |
aat |
25225169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 26168315 - 26168213
Alignment:
| Q |
22 |
aacatgcgtggaatcttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttcagcttctctatcataagtgg |
121 |
Q |
| |
|
||||||||||| ||||| | ||||||| ||||| | |||| | ||||| | |||||||||||||||| |||||| |||| | | ||||||||| |||| |
|
|
| T |
26168315 |
aacatgcgtgggatctttgtcaccccacgctccataagacctcttacaccaagttttgaatcatcaaaaactttcaattcatcatttctatcatatgtgg |
26168216 |
T |
|
| Q |
122 |
aat |
124 |
Q |
| |
|
||| |
|
|
| T |
26168215 |
aat |
26168213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 26395926 - 26395846
Alignment:
| Q |
22 |
aacatgcgtggaatcttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttca |
102 |
Q |
| |
|
||||||||||| ||||| | |||||| |||||| | |||| | ||||| |||||||| || |||||||||||||||||| |
|
|
| T |
26395926 |
aacatgcgtgggatctttgttaccccactctccacaagacctcttacaccaacttttgattcttcaaaagctttcacttca |
26395846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 184; Significance: 3e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 233 - 540
Target Start/End: Complemental strand, 49465235 - 49464928
Alignment:
| Q |
233 |
tttcacgaacaagatgctaatgtaagaaaagagttttatacgcgggatttgaacaaaaaagttatgtattactctaatgtactcttgtttagtggaaaac |
332 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||| ||||| ||||| || ||||||||||||||||| |||||||||| |||||||||||| || |
|
|
| T |
49465235 |
tttcatgaacaagatgctgatgtaagaaaagagttttacacgcgtgatttaaagaaaaaagttatgtattattctaatgtacacttgtttagtgggcaag |
49465136 |
T |
|
| Q |
333 |
ctgctaattggagagatacatttggttttgctattgctcctcattcattcaaaccagatgaagtgccaccaatatgcaggtaatgaactcaatattaatt |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49465135 |
ctgctaattggagagatacatttggttttgctgttgctcctcatccattcaaacccgaggaagtgccaccaatatgcaggtaatgaactcaatattaatt |
49465036 |
T |
|
| Q |
433 |
tggattctcactctcaaaatcataatcaaatttatttgtatatctaggcatttatttatgggttatatatgtttctaatcttaaaaagtagatagatgat |
532 |
Q |
| |
|
||||||||||||||| |||||||||||| |||| | | |||||| |||||||||||||||||||| |||| | | |||||||||| |||||| ||| | |
|
|
| T |
49465035 |
tggattctcactctccaaatcataatcatatttttctcactatctaagcatttatttatgggttataaatgtcttttatcttaaaaaatagataaatgtt |
49464936 |
T |
|
| Q |
533 |
tactttta |
540 |
Q |
| |
|
||| |||| |
|
|
| T |
49464935 |
taccttta |
49464928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 4 - 193
Target Start/End: Original strand, 49465435 - 49465622
Alignment:
| Q |
4 |
tccatcttcccagtatggaacatgcgtggaatcttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttcag |
103 |
Q |
| |
|
|||| |||||| | |||||| | |||||| ||||| || ||||||||||| |||||||| ||||| ||| || |||||||||||||||||||||||||| |
|
|
| T |
49465435 |
tccaacttcccggcatggaaaaagcgtgggatctttgaaaccccagactcaaccaaaccattgacgcctgctcgtgaatcatcaaaagctttcacttcag |
49465534 |
T |
|
| Q |
104 |
cttctctatcataagtggaattagtggtttcctctaattggtttgtgtttttcaccaccatgttgagagggagaaacaacaccagaatag |
193 |
Q |
| |
|
||| ||||||||||||||||| ||||| |||||||||||| ||||||||||| ||||||||||||||| | ||||||| |||||||||| |
|
|
| T |
49465535 |
cttttctatcataagtggaatcagtggcttcctctaattgatttgtgttttttaccaccatgttgagaag--gaaacaaaaccagaatag |
49465622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 8349072 - 8348970
Alignment:
| Q |
22 |
aacatgcgtggaatcttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttcagcttctctatcataagtgg |
121 |
Q |
| |
|
||||||||||| ||||| | |||||| ||||| | |||| | ||||| | |||||||||||||||||||||||||||||| | ||||||||| |||| |
|
|
| T |
8349072 |
aacatgcgtgggatctttgttaccccacgctccataagacctctaacaccaagttttgaatcatcaaaagctttcacttcagcatttctatcatatgtgg |
8348973 |
T |
|
| Q |
122 |
aat |
124 |
Q |
| |
|
||| |
|
|
| T |
8348972 |
aat |
8348970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 2e-87; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 219 - 478
Target Start/End: Original strand, 29462932 - 29463191
Alignment:
| Q |
219 |
atggaattagtaagtttcacgaacaagatgctaatgtaagaaaagagttttatacgcgggatttgaacaaaaaagttatgtattactctaatgtactctt |
318 |
Q |
| |
|
||||||| ||| |||||| ||||||||||| |||||||||||||||||||||| |||||||| || ||||||||| ||||||||||||||||| ||| |
|
|
| T |
29462932 |
atggaatctgtaggtttcatgaacaagatgccgatgtaagaaaagagttttatacacgggatttaaagaaaaaagtttcgtattactctaatgtacgctt |
29463031 |
T |
|
| Q |
319 |
gtttagtggaaaacctgctaattggagagatacatttggttttgctattgctcctcattcattcaaaccagatgaagtgccaccaatatgcaggtaatga |
418 |
Q |
| |
|
||||| |||| || |||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||| |||||||||||||| | |
|
|
| T |
29463032 |
gtttaatggacaaggtgctaattggagagatacatttggttttgctattgctcctgatccattcaatccagatgaagtgccacaaatatgcaggtaataa |
29463131 |
T |
|
| Q |
419 |
actcaatattaatttggattctcactctcaaaatcataatcaaatttatttgtatatcta |
478 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||| |
|
|
| T |
29463132 |
actcaatattaatttggattctcactctctaaatcataatcagatttaattgtatatcta |
29463191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 29462749 - 29462555
Alignment:
| Q |
1 |
atttccatcttcccagtatggaacatgcgtggaatcttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcactt |
100 |
Q |
| |
|
||||||| ||||| ||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
29462749 |
atttccaacttcctagtgtagaacatgcgtggaatctttgacaccccagaatccaccaaacctttgacaccaacttttgaatcatcaaaagctttaactt |
29462650 |
T |
|
| Q |
101 |
cagcttctctatcataagtggaattagtggtttcctctaattggtttgtgtttttcaccaccatgttgagagggagaaacaacaccagaatagaagt |
197 |
Q |
| |
|
| |||||||||||||||||| ||| | ||| ||||| ||||||||||| ||||| |||||||| |||| ||| |||||||||||||||| |||| |
|
|
| T |
29462649 |
cggcttctctatcataagtgaaatcactggattcctttaattggtttgagttttctaccaccatattgatagg--caaacaacaccagaataaaagt |
29462555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 233 - 416
Target Start/End: Original strand, 19890558 - 19890741
Alignment:
| Q |
233 |
tttcacgaacaagatgctaatgtaagaaaagagttttatacgcgggatttgaacaaaaaagttatgtattactctaatgtactcttgtttagtggaaaac |
332 |
Q |
| |
|
||||| |||||||||| | ||||||||||||||||||| || || ||||| || |||||||||||||||| ||| |||| | |||||||||||| || |
|
|
| T |
19890558 |
tttcatgaacaagatgttgatgtaagaaaagagttttacactcgtgatttaaagaaaaaagttatgtatttctccaatggaaccttgtttagtggccaag |
19890657 |
T |
|
| Q |
333 |
ctgctaattggagagatacatttggttttgctattgctcctcattcattcaaaccagatgaagtgccaccaatatgcaggtaat |
416 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||| | ||| | ||||||||||||| |
|
|
| T |
19890658 |
ctgctaattggagagatacaattggttttgctgttgctcctcatccattcaaaccaaatgaactaccatccatatgcaggtaat |
19890741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 19844488 - 19844333
Alignment:
| Q |
17 |
tatggaacatgcgtggaatcttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttcagcttctctatcata |
116 |
Q |
| |
|
|||||||||| |||| ||||||||||| || ||||||||||||||| | ||||| ||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
19844488 |
tatggaacatctgtgggatcttcgacactccggactccaccaaacctctcacaccagcttttgaatcatcaaaagctttcacttcattgtatctatcata |
19844389 |
T |
|
| Q |
117 |
agtggaattagtggtttcctctaattggtttgtgtttttcaccaccatgttgagag |
172 |
Q |
| |
|
|||||||||||||| || |||| |||||||| |||||| |||||||| ||||||| |
|
|
| T |
19844388 |
agtggaattagtggatttttctacttggtttgagttttttaccaccatattgagag |
19844333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 19890346 - 19890171
Alignment:
| Q |
16 |
gtatggaacatgcgtggaatcttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttcagcttctctatcat |
115 |
Q |
| |
|
||||| || ||||| || ||||| ||||||||| ||||||||||||| ||||||| ||||||||||||||||| ||||||||| | || |||||||| |
|
|
| T |
19890346 |
gtatgaaaaatgcgcgggatctttgacaccccatgctccaccaaacctctgacaccagcttttgaatcatcaaaatttttcacttctgtttttctatcat |
19890247 |
T |
|
| Q |
116 |
aagtggaattagtggtttcctctaattggtttgtgtttttcaccaccatgttgagagggagaaacaacaccagaatag |
193 |
Q |
| |
|
||||||||||||| | ||||||||| || ||||||||||| |||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
19890246 |
aagtggaattagtagattcctctaactgatttgtgttttttaccaccatattgagagg--aaaacaacaccaaaatag |
19890171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 218 - 417
Target Start/End: Original strand, 19844686 - 19844885
Alignment:
| Q |
218 |
catggaattagtaagtttcacgaacaagatgctaatgtaagaaaagagttttatacgcgggatttgaacaaaaaagttatgtattactctaatgtactct |
317 |
Q |
| |
|
|||||||| |||| ||||| |||||||||| |||||| |||||||||||||||||||| ||||| | |||||||| |||||| ||| ||| | || |
|
|
| T |
19844686 |
catggaatccgtaactttcatgaacaagatgttaatgttagaaaagagttttatacgcgtgatttaagggaaaaagttgtgtatttctccaatacaacct |
19844785 |
T |
|
| Q |
318 |
tgtttagtggaaaacctgctaattggagagatacatttggttttgctattgctcctcattcattcaaaccagatgaagtgccaccaatatgcaggtaatg |
417 |
Q |
| |
|
| |||| | | || ||||| |||||||||||||| |||| || | | |||||||| || ||||||||||||| ||| | |||||||||||||||||||| |
|
|
| T |
19844786 |
tatttactagtcaagctgctgattggagagatacagttggattcgttgttgctcctgatccattcaaaccagaagaaataccaccaatatgcaggtaatg |
19844885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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