View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21623_low_20 (Length: 268)
Name: NF21623_low_20
Description: NF21623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21623_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 157 - 252
Target Start/End: Complemental strand, 14966944 - 14966849
Alignment:
| Q |
157 |
agtgccaccaataaacgggttattaggagtaagcccgaatttcggtggaaatcctaaatgtccaatgccagggtaatgcagtttaccatgatcatg |
252 |
Q |
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| T |
14966944 |
agtgccaccaataaacgggttattaggagtaagcccgaatttcggtggaaatccaaaatgtccaatgccagggtaatgcagtttaccatgatcatg |
14966849 |
T |
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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 14967073 - 14967008
Alignment:
| Q |
28 |
gggatttggaacctcaaagccagggtttggaacaaatgtgtcatcgccaccgggaacataactatg |
93 |
Q |
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| T |
14967073 |
gggatttggaacctcaaagccagggtttggaacaaatgtgtcatcgccaccgggaacataactatg |
14967008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 14983161 - 14983095
Alignment:
| Q |
24 |
tgccgggatttggaacctcaaagccagggtttggaacaaatgtgtcatcgccaccgggaacataact |
90 |
Q |
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| T |
14983161 |
tgccaggatttggaacctcaaagccagggtttggaacaaatgtgtcatcgccaccaggaacgtaact |
14983095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 246
Target Start/End: Complemental strand, 14983028 - 14982939
Alignment:
| Q |
157 |
agtgccaccaataaacgggttattaggagtaagcccgaatttcggtggaaatcctaaatgtccaatgccagggtaatgcagtttaccatg |
246 |
Q |
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| T |
14983028 |
agtgccaccaataaatgggttattaggagtaactccaaagtgtggtggaaaccctaaatgtccaatgcctggataatgtagtttcccatg |
14982939 |
T |
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