View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21623_low_4 (Length: 462)

Name: NF21623_low_4
Description: NF21623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21623_low_4
NF21623_low_4
[»] chr7 (14 HSPs)
chr7 (1-446)||(4698300-4698745)
chr7 (1-446)||(4862450-4862895)
chr7 (38-444)||(4784947-4785353)
chr7 (38-444)||(4817376-4817782)
chr7 (72-400)||(4713222-4713550)
chr7 (72-402)||(4854590-4854920)
chr7 (259-432)||(4629728-4629901)
chr7 (259-446)||(4652339-4652526)
chr7 (259-438)||(4665754-4665933)
chr7 (259-384)||(4635676-4635801)
chr7 (86-381)||(4642350-4642645)
chr7 (259-435)||(4660620-4660796)
chr7 (81-381)||(4671281-4671581)
chr7 (86-185)||(4635503-4635602)
[»] chr4 (2 HSPs)
chr4 (260-446)||(18926849-18927035)
chr4 (149-185)||(18927110-18927146)


Alignment Details
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 4698745 - 4698300
Alignment:
Q  1 acttccatcttcacttgtaaactgcgacaattgttgtcttttctcacttttttccttttcattattccaaccaaacttagtatcctcctcactcatctcc 100  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4698745 acttccatcttcacttataaactgcgacacttgttgtcttttctcacttttttccttttcattattccaaccaaacttagtatcctcctcacttatctcc 4698646  T
Q  101 aactgcaatgcaaactctaaagctccaacaacatcactcatcgacatccgttgatttccatcatcatgcaaacaactcaacgccatttggcaataacttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4698645 aactgcaatgcaaactctaaagctccaacaacatcactcatcgacatccgttgatttccatcatcatgcaaacaactcaacaccatttggcaataacttt 4698546  T
Q  201 ttagacatccagccgttatagaatcctttatgaacgggtccaccatctcctcgatgatcacaccttcattgtaacatctttggaaccaaaagactaaact 300  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4698545 ttagacattcagccgttatagaatcctttatgaacgggtccaccatctcttcgatgatcacaccttcattgtaacatctttggaaccaaaagactaaact 4698446  T
Q  301 cgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaagaagcacaacaccgaaggagtacacgtcggactttagggtcaac 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  4698445 cgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaagaagcacaacaccaaaagagtacacgtcggactttagggtcaac 4698346  T
Q  401 ctttgacgaaggtagtattcgggatctaaatacccgagactaccct 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  4698345 ctttgacgaaggtagtattcgggatctaaatacccgagactaccct 4698300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 4862450 - 4862895
Alignment:
Q  1 acttccatcttcacttgtaaactgcgacaattgttgtcttttctcacttttttccttttcattattccaaccaaacttagtatcctcctcactcatctcc 100  Q
    |||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||| | |||||||| |||||||||| |||||||||||||||    
T  4862450 acttccatcttcacttgtaaactgtgacacttgttgtctttcctcacttttttccttttcatgagtccaaccagacttagtatcttcctcactcatctcc 4862549  T
Q  101 aactgcaatgcaaactctaaagctccaacaacatcactcatcgacatccgttgatttccatcatcatgcaaacaactcaacgccatttggcaataacttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||  ||||||| ||||||| ||    
T  4862550 aactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaacttaaaaccatttgacaataacatt 4862649  T
Q  201 ttagacatccagccgttatagaatcctttatgaacgggtccaccatctcctcgatgatcacaccttcattgtaacatctttggaaccaaaagactaaact 300  Q
    | | |||  ||   ||||||||||| ||||||||||| || |||||||| || || || |||||||||||||||||| |||| ||||||| |||||||||    
T  4862650 tcaaacactcacttgttatagaatcttttatgaacggatctaccatctcttcaattatgacaccttcattgtaacatttttgaaaccaaacgactaaact 4862749  T
Q  301 cgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaagaagcacaacaccgaaggagtacacgtcggactttagggtcaac 400  Q
    |||||||||||||||  ||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||| ||||| ||||||    
T  4862750 cgcttttttcttttcagaagaacgaaccaatggtggtctcgcacacaacacctcaagaaggacaacaccgaaagaatacacgtcggattttagagtcaac 4862849  T
Q  401 ctttgacgaaggtagtattcgggatctaaatacccgagactaccct 446  Q
    |||||||||||||||||||| ||||||||||| || ||||||||||    
T  4862850 ctttgacgaaggtagtattctggatctaaatatccaagactaccct 4862895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 38 - 444
Target Start/End: Complemental strand, 4785353 - 4784947
Alignment:
Q  38 cttttctcacttttttccttttcattattccaaccaaacttagtatcctcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcac 137  Q
    |||| |||||| ||||||||||| ||  | | | ||| |||| ||||||||||||||||||| |||||||||||||||||||| |   |||| |||||||    
T  4785353 ctttgctcactcttttccttttccttggtaccaacaagcttactatcctcctcactcatctctaactgcaatgcaaactctaatgtcgcaaccacatcac 4785254  T
Q  138 tcatcgacatccgttgatttccatcatcatgcaaacaactcaacgccatttggcaataactttttagacatccagccgttatagaatcctttatgaacgg 237  Q
    |||||||||| ||||||||||||||||||||||||||| | ||| ||||||| ||||||| ||| | |||  ||   ||||||||||| || ||||||||    
T  4785253 tcatcgacattcgttgatttccatcatcatgcaaacaatttaacaccatttgacaataacatttcaaacactcacttgttatagaatctttaatgaacgg 4785154  T
Q  238 gtccaccatctcctcgatgatcacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggt 337  Q
    ||||||||| || || || | || |||||||||||||||| |||| |||||||   | ||||| ||||||||||| ||||||||||||||||| || |||    
T  4785153 gtccaccatatcttcaattaccataccttcattgtaacatgtttgaaaccaaacagccaaacttgcttttttcttatccaaagaacgaaccaacgggggt 4785054  T
Q  338 ctcgcacacaatacctcaagaagcacaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccga 437  Q
    ||||||||||| ||||||||||||||||||||||| |||||||| || |||||||| ||||||||||| || | ||||||||| ||||| ||||||||||    
T  4785053 ctcgcacacaacacctcaagaagcacaacaccgaaagagtacacatcagactttagagtcaacctttgtcgcatgtagtattctggatccaaatacccga 4784954  T
Q  438 gactacc 444  Q
    |||||||    
T  4784953 gactacc 4784947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 38 - 444
Target Start/End: Complemental strand, 4817782 - 4817376
Alignment:
Q  38 cttttctcacttttttccttttcattattccaaccaaacttagtatcctcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcac 137  Q
    |||| |||||| ||||||||||| ||  | | | ||| |||| ||||||||||||||||||| |||||||||||||||||||| |   |||| |||||||    
T  4817782 ctttgctcactcttttccttttccttggtaccaacaagcttactatcctcctcactcatctctaactgcaatgcaaactctaatgtcgcaaccacatcac 4817683  T
Q  138 tcatcgacatccgttgatttccatcatcatgcaaacaactcaacgccatttggcaataactttttagacatccagccgttatagaatcctttatgaacgg 237  Q
    |||||||||| ||||||||||||||||||||||||||| | ||| ||||||| ||||||| ||| | |||  ||   ||||||||||| || ||||||||    
T  4817682 tcatcgacattcgttgatttccatcatcatgcaaacaatttaacaccatttgacaataacatttcaaacactcacttgttatagaatctttaatgaacgg 4817583  T
Q  238 gtccaccatctcctcgatgatcacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggt 337  Q
    ||||||||| || || || | || |||||||||||||||| |||| |||||||   | ||||| ||||||||||| |||||||| |||||||| || |||    
T  4817582 gtccaccatatcttcaattaccataccttcattgtaacatgtttgaaaccaaacagccaaacttgcttttttcttatccaaagaccgaaccaacgggggt 4817483  T
Q  338 ctcgcacacaatacctcaagaagcacaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccga 437  Q
    ||||||||||| ||||||||||||||||||||||| |||||||| || |||||||| ||||| ||||| || | ||||||||| ||||| ||||||||||    
T  4817482 ctcgcacacaacacctcaagaagcacaacaccgaaagagtacacatcagactttagagtcaatctttgtcgcatgtagtattctggatccaaatacccga 4817383  T
Q  438 gactacc 444  Q
    |||||||    
T  4817382 gactacc 4817376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 72 - 400
Target Start/End: Complemental strand, 4713550 - 4713222
Alignment:
Q  72 caaacttagtatcctcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcatcgacatccgttgatttccatcatcatgcaa 171  Q
    ||||||||  ||||||| |||||||  |||| | ||| |||| ||||||||  ||||| ||||||||||| ||||| ||||||||||||||| |||||||    
T  4713550 caaacttaccatcctccccactcataaccaatttcaacgcaagctctaaagtcccaaccacatcactcatagacattcgttgatttccatcaccatgcaa 4713451  T
Q  172 acaactcaacgccatttggcaataactttttagacatccagccgttatagaatcctttatgaacgggtccaccatctcctcgatgatcacaccttcattg 271  Q
    |||||||||| ||||||  ||||||| ||| | |||  ||   |||||||| |||||||||||||||||||||||||| || |  |||||||||||||||    
T  4713450 acaactcaacaccatttcacaataacatttcaaacactcacttgttatagagtcctttatgaacgggtccaccatctcttcaactatcacaccttcattg 4713351  T
Q  272 taacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaagaagcacaacaccga 371  Q
    |||||| ||| |||| ||   || |   || |||||| ||| ||||||||| || |||||||||||||||||||||| ||||||||||||||||| ||||    
T  4713350 taacattttttgaacaaagcaaccatgttcactttttccttatccaaagaatgatccaaaggtggtctcgcacacaacacctcaagaagcacaactccga 4713251  T
Q  372 aggagtacacgtcggactttagggtcaac 400  Q
    | ||||||||||| ||||| || ||||||    
T  4713250 atgagtacacgtcagacttaagagtcaac 4713222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 72 - 402
Target Start/End: Complemental strand, 4854920 - 4854590
Alignment:
Q  72 caaacttagtatcctcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcatcgacatccgttgatttccatcatcatgcaa 171  Q
    |||||||| ||| |||| |||||||  |||| | ||| |||| |||||||| |||||| ||||||||||| ||||||||||||||||||||| |||||||    
T  4854920 caaacttactattctccccactcataaccaatttcaacgcaagctctaaagttccaaccacatcactcatagacatccgttgatttccatcaccatgcaa 4854821  T
Q  172 acaactcaacgccatttggcaataactttttagacatccagccgttatagaatcctttatgaacgggtccaccatctcctcgatgatcacaccttcattg 271  Q
    |||||||||| ||||||| ||||||  ||| | |||  ||   |||||||| ||||||||||| |||||||||||||| || |  ||||| |||||||||    
T  4854820 acaactcaacaccatttgacaataaaatttcaaacactcacttgttatagagtcctttatgaatgggtccaccatctcttcaactatcactccttcattg 4854721  T
Q  272 taacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaagaagcacaacaccga 371  Q
    |||||| ||| |||| ||   || |   || |||||||||| |||||  || || |||||||||||||||||||||| | ||||||||| ||| ||||||    
T  4854720 taacattttttgaacaaagcaaccatgttcacttttttcttatccaataaatgatccaaaggtggtctcgcacacaacatctcaagaagtacatcaccga 4854621  T
Q  372 aggagtacacgtcggactttagggtcaacct 402  Q
    | |||||||| || |||||||| ||||||||    
T  4854620 aagagtacacatcagactttagagtcaacct 4854590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 259 - 432
Target Start/End: Original strand, 4629728 - 4629901
Alignment:
Q  259 cacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaaga 358  Q
    |||||||||||| |  ||| |||| |||||| | |||| ||| ||| | ||||| ||||||  |||||||||||||||||| |||||||| |||||||||    
T  4629728 cacaccttcattatggcatttttgaaaccaacaaactagactagctgtattcttatccaaatcacgaaccaaaggtggtctagcacacaacacctcaaga 4629827  T
Q  359 agcacaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaata 432  Q
    ||||| ||||| || ||||||||||| || ||||| || | ||||||  | |  |||||||||||||| |||||    
T  4629828 agcaccacaccaaacgagtacacgtcagattttagagttagcctttggagcatatagtattcgggatccaaata 4629901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 259 - 446
Target Start/End: Original strand, 4652339 - 4652526
Alignment:
Q  259 cacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaaga 358  Q
    ||||||||||| ||| ||| |||  |||||| | |||| ||| ||| | ||||| ||||||  |||||||||||||||||| |||||||| |||||||||    
T  4652339 cacaccttcatcgtagcattttttaaaccaacaaactagacttgctgtattcttatccaaatcacgaaccaaaggtggtctagcacacaacacctcaaga 4652438  T
Q  359 agcacaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgagactaccct 446  Q
    ||||| |||||||| |||||||| || || ||||| || | ||||||  | |  || ||||| ||||| |||||||| || |||||||    
T  4652439 agcaccacaccgaatgagtacacatcagattttagagttagcctttggagcatataatattctggatccaaataccctaggctaccct 4652526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 259 - 438
Target Start/End: Original strand, 4665754 - 4665933
Alignment:
Q  259 cacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaaga 358  Q
    ||||||||||| ||||||| |||  |||||| | |||| ||| ||  | ||||| ||||||  |||||||||||||||||| |||||||| |||||||||    
T  4665754 cacaccttcatcgtaacattttttaaaccaacaaactagactagcagtattcttatccaaatcacgaaccaaaggtggtctagcacacaacacctcaaga 4665853  T
Q  359 agcacaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgag 438  Q
    ||||| |||||||| |||||||| || || ||||| || | ||||||  | |  || ||||||||||| ||||| |||||    
T  4665854 agcaccacaccgaacgagtacacatcagattttagagttagcctttggagcatataatattcgggatccaaatatccgag 4665933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 384
Target Start/End: Original strand, 4635676 - 4635801
Alignment:
Q  259 cacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaaga 358  Q
    ||||||||| | ||| ||||||| ||||||| | |||| ||| ||| | ||||| ||||||   |||||||||||||| || |||||||| |||||||||    
T  4635676 cacaccttcttcgtagcatcttttgaaccaacaaactagactagctgtattcttatccaaatcgcgaaccaaaggtggcctagcacacaacacctcaaga 4635775  T
Q  359 agcacaacaccgaaggagtacacgtc 384  Q
    ||||| |||||||| |||||||||||    
T  4635776 agcaccacaccgaatgagtacacgtc 4635801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 86 - 381
Target Start/End: Original strand, 4642350 - 4642645
Alignment:
Q  86 tcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcatcgacatccgttgatttccatcatcatgcaaacaactcaacgcca 185  Q
    |||||||||| | |||| ||||| |||||||||||| | ||||| || | |||||| ||    |||||| |||||||||||||||||||||| |||||||    
T  4642350 tcctcactcaccaccaattgcaacgcaaactctaaacccccaaccacttgactcattgagggtcgttgaattccatcatcatgcaaacaacttaacgcca 4642449  T
Q  186 tttggcaataactttttagacatccagccgttatagaatcctttatgaacgggtccaccatctcctcgatgatcacaccttcattgtaacatctttggaa 285  Q
      | |||||||  || || |||  |  |||| || |||||  ||| ||| || ||||| || |  || ||   ||||||||| | ||| ||||||| |||    
T  4642450 acttgcaataatattctaaacactcgcccgtgatggaatctcttaggaatggatccactatttgttcaatcgccacaccttcttcgtagcatcttttgaa 4642549  T
Q  286 ccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaagaagcacaacaccgaaggagtacac 381  Q
    |||| | |||| ||| ||  | ||||| ||||||  ||||||||||||||| || |||||||| || |||||||| || |||||||| ||||||||    
T  4642550 ccaacaaactagactagcagtattcttatccaaattacgaaccaaaggtggcctagcacacaacacttcaagaagtaccacaccgaacgagtacac 4642645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 259 - 435
Target Start/End: Original strand, 4660620 - 4660796
Alignment:
Q  259 cacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaaga 358  Q
    |||||||||||  || |||||||  |||||| | |||| ||| | | | ||||| ||||||   |||||||| ||||| || |||||||| |||||||||    
T  4660620 cacaccttcatcatagcatcttttaaaccaacaaactagactagttgtattcttatccaaatcgcgaaccaatggtggcctagcacacaacacctcaaga 4660719  T
Q  359 agcacaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaataccc 435  Q
    ||||| |||||||| |||||||| || || ||||| || ||||||||  | |  ||||||| |||||| ||||||||    
T  4660720 agcaccacaccgaacgagtacacttcagattttagagttaacctttggagcatatagtattggggatccaaataccc 4660796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 81 - 381
Target Start/End: Original strand, 4671281 - 4671581
Alignment:
Q  81 tatcctcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcatcgacatccgttgatttccatcatcatgcaaacaactcaa 180  Q
    |||| |||||||||| | |||| |||||  ||||||||||| | ||||| || | |||||| ||    |||||| |||||||||||||||| ||||||||    
T  4671281 tatcttcctcactcaccaccaattgcaacacaaactctaaacccccaaccacttgactcattgagggtcgttgagttccatcatcatgcaagcaactcaa 4671380  T
Q  181 cgccatttggcaataactttttagacatccagccgttatagaatcctttatgaacgggtccaccatctcctcgatgatcacaccttcattgtaacatctt 280  Q
    |||||  | |||||||  ||  | |||  || |||| ||||||||| ||| ||| |  ||||  || |  || ||   ||||||||||| ||| ||||||    
T  4671381 cgccaacttgcaataatattccaaacactcacccgtgatagaatcccttaggaatgaatccagtatttgttcaatcgccacaccttcatcgtagcatctt 4671480  T
Q  281 tggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaagaagcacaacaccgaaggagtaca 380  Q
    |  |||||| | |||| ||| ||| | ||||| ||||||   |||||||||||||| || |||||||| || |||||||| || |||||||| |||||||    
T  4671481 ttaaaccaacaaactagactagctgtattcttatccaaatcgcgaaccaaaggtggcctagcacacaacacttcaagaagtaccacaccgaatgagtaca 4671580  T
Q  381 c 381  Q
    |    
T  4671581 c 4671581  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 185
Target Start/End: Original strand, 4635503 - 4635602
Alignment:
Q  86 tcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcatcgacatccgttgatttccatcatcatgcaaacaactcaacgcca 185  Q
    |||||||||| | | || ||||| |||||||||||| | ||||| || | |||||| ||    |||||| |||||||||||||||||||||| |||||||    
T  4635503 tcctcactcaccactaattgcaacgcaaactctaaacccccaaccacttgactcattgagggtcgttgaattccatcatcatgcaaacaacttaacgcca 4635602  T

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Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 260 - 446
Target Start/End: Complemental strand, 18927035 - 18926849
Alignment:
Q  260 acaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaagaa 359  Q
    |||||||||| |||||||||||| |||||| | |||| ||| ||  | ||||| || |||   |||||||||||||| || |||||||||||||||||||    
T  18927035 acaccttcatcgtaacatctttgaaaccaacaaactagactagccgtcttcttatctaaatcgcgaaccaaaggtggccttgcacacaatacctcaagaa 18926936  T
Q  360 gcacaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgagactaccct 446  Q
    |||| |||||||| ||||||||||| || |||||||| | ||||||  | |  ||||| || |||||||||||||| ||||| ||||    
T  18926935 gcaccacaccgaatgagtacacgtcagattttagggtaagcctttggagcatatagtactcaggatctaaatacccaagactcccct 18926849  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 18927146 - 18927110
Alignment:
Q  149 cgttgatttccatcatcatgcaaacaactcaacgcca 185  Q
    |||||| | ||||||||||||||||||||||||||||    
T  18927146 cgttgagtcccatcatcatgcaaacaactcaacgcca 18927110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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