View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21623_low_5 (Length: 461)
Name: NF21623_low_5
Description: NF21623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21623_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 8818239 - 8818091
Alignment:
| Q |
17 |
atgaaggatgttctacctcaatttttgacttgaagtattaccgtcacatgccctctgatccggaatattctccatcttttcaatgaaaatttccgtaaat |
116 |
Q |
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| T |
8818239 |
atgaaggatgttataccccaatttttgacctgaagtattattgtcacatatcctctaacccgaaatattctccgtcttttcaataaaaatttcgacaaat |
8818140 |
T |
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| Q |
117 |
agg-attctaaaatacctcatttatgttccgattcggatcatcttctctc |
165 |
Q |
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| T |
8818139 |
aggcattttaaaatacctcatttttg-tccgattcggaccatcttctctc |
8818091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 361 - 438
Target Start/End: Complemental strand, 8817896 - 8817816
Alignment:
| Q |
361 |
atctcaactgcgccaccattagtggccaaattactctcatgt---ctttcacattccaaaaccttcaatcccatcaattcc |
438 |
Q |
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| T |
8817896 |
atctcaactgagccaccattagtggccaaattactctcatgtcaactttcacattccaaaaccttcaatctcatcaattcc |
8817816 |
T |
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