View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21623_low_6 (Length: 460)

Name: NF21623_low_6
Description: NF21623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21623_low_6
NF21623_low_6
[»] chr4 (4 HSPs)
chr4 (17-165)||(8818091-8818239)
chr4 (361-427)||(8817827-8817896)
chr4 (422-453)||(23533301-23533332)
chr4 (425-453)||(12888192-12888220)
[»] chr7 (1 HSPs)
chr7 (422-453)||(5893028-5893059)
[»] chr3 (1 HSPs)
chr3 (425-453)||(17113769-17113797)
[»] chr1 (1 HSPs)
chr1 (425-453)||(27109797-27109825)


Alignment Details
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 8818239 - 8818091
Alignment:
Q  17 atgaaggatgttctacctcaatttttgacttgaagtattaccgtcacatgccctctgatccggaatattctccatcttttcaatgaaaatttccgtaaat 116  Q
    |||||||||||| |||| ||||||||||| ||||||||||  |||||||  ||||| | ||| |||||||||| |||||||||| ||||||||   ||||    
T  8818239 atgaaggatgttataccccaatttttgacctgaagtattattgtcacatatcctctaacccgaaatattctccgtcttttcaataaaaatttcgacaaat 8818140  T
Q  117 agg-attctaaaatacctcatttatgttccgattcggatcatcttctctc 165  Q
    ||| ||| ||||||||||||||| || ||||||||||| |||||||||||    
T  8818139 aggcattttaaaatacctcatttttg-tccgattcggaccatcttctctc 8818091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 361 - 427
Target Start/End: Complemental strand, 8817896 - 8817827
Alignment:
Q  361 atctcaactgcgccaccattagtggccaaattactctcatgt---ctttcacattccaaaaccttcaatc 427  Q
    |||||||||| |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  8817896 atctcaactgagccaccattagtggccaaattactctcatgtcaactttcacattccaaaaccttcaatc 8817827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 453
Target Start/End: Original strand, 23533301 - 23533332
Alignment:
Q  422 tcaatccacatcgacaaaccaccagataacag 453  Q
    ||||||||||||||||||||||||||||||||    
T  23533301 tcaatccacatcgacaaaccaccagataacag 23533332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 425 - 453
Target Start/End: Original strand, 12888192 - 12888220
Alignment:
Q  425 atccacatcgacaaaccaccagataacag 453  Q
    |||||||||||||||||||||||||||||    
T  12888192 atccacatcgacaaaccaccagataacag 12888220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 453
Target Start/End: Complemental strand, 5893059 - 5893028
Alignment:
Q  422 tcaatccacatcgacaaaccaccagataacag 453  Q
    ||||||||||||||||||||||||||||||||    
T  5893059 tcaatccacatcgacaaaccaccagataacag 5893028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 425 - 453
Target Start/End: Complemental strand, 17113797 - 17113769
Alignment:
Q  425 atccacatcgacaaaccaccagataacag 453  Q
    |||||||||||||||||||||||||||||    
T  17113797 atccacatcgacaaaccaccagataacag 17113769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 425 - 453
Target Start/End: Original strand, 27109797 - 27109825
Alignment:
Q  425 atccacatcgacaaaccaccagataacag 453  Q
    |||||||||||||||||||||||||||||    
T  27109797 atccacatcgacaaaccaccagataacag 27109825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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