View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21624_high_11 (Length: 401)
Name: NF21624_high_11
Description: NF21624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21624_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 35153748 - 35153555
Alignment:
| Q |
17 |
acgatgaaccttgatttgagtttggtggtggtggtgaaaaggagggtgatggatgtgaggttgaagataaagtgggaagatatacagtgtgggtagacca |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35153748 |
acgatgaaccttgatttgagtttggtggtggtggtgaaaaggagggtgatggaagtgaggttgaagataaagtgggaagatatacagtgtgggtagacca |
35153649 |
T |
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| Q |
117 |
taataagatcagtgtatctcttcaatccagtggtcaaaaacagcctttcccatgatgggaaaaaacaacctttccccattctaaatggcaccaaa |
211 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| |||| ||||||||||||||| |
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| T |
35153648 |
taataagatcagtgtatctcttcaatccagtgttcaaaaacagcctttcccatgatgggaaaaaacagcattt-cccaggctaaatggcaccaaa |
35153555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 379
Target Start/End: Original strand, 42757049 - 42757121
Alignment:
| Q |
305 |
ttgatctaaatatattcctgaatcaatataataggtcaattgcaagattcgacttttctctctcttctctatgag |
379 |
Q |
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|||||||||||||||||||||||||| || |||| ||||||| | ||| |||| || ||||||||||||||||| |
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| T |
42757049 |
ttgatctaaatatattcctgaatcaacatgatagatcaattggaggatacgacctt--tctctcttctctatgag |
42757121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 53981260 - 53981451
Alignment:
| Q |
17 |
acgatgaaccttgatttgagtttggtggtggtggtgaaaaggagggtgatggatgtgaggttgaagataaagtgggaagatatacagtgtgggtagacca |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| |||||| |||||||| |
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| T |
53981260 |
acgatgaaccttgatttgagtttggtggtggtggtgaaaaggagg-tgatggaagtgaggttgaagataaagtggaaagatatatagtgtgagtagacca |
53981358 |
T |
|
| Q |
117 |
taataagatcagtgtatctcttcaatccagtggtcaaaaacagcctttcccatgatgggaaaaaacaacctttccccattctaaatggcacca |
209 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||| |
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| T |
53981359 |
taataaaatcagtgtatctcttcaatccagtggtcaaaaacagcctttcccatgatgggaaaaaacagcctttccctaggctaaatggcacca |
53981451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 53975554 - 53975364
Alignment:
| Q |
17 |
acgatgaaccttgatttgagtttggtggtggtggtgaaaaggagggtgatggatgtgaggttgaagataaagtgggaagatatacagtgtgggtagacca |
116 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
53975554 |
acgatgagccttgatttgagtttggtggtggtggtgaaaaggagg-tgatagtagtgaggttgaagataaagtgggaagatatacagtgtggatagacca |
53975456 |
T |
|
| Q |
117 |
taataagatcagtgtatctcttcaatccagtggtcaaaaacagcctttcccatgatgggaaaaaacaacctttccccattctaaatggcacc |
208 |
Q |
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||||||||| | |||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
53975455 |
taataagattaatgtatctcttcaatccagtggtcaaaaacaacccttcccatgatgggaaaaaacagcctttccccaagctaaatggcacc |
53975364 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 280 - 385
Target Start/End: Complemental strand, 49284186 - 49284081
Alignment:
| Q |
280 |
attaatagaaccctaaacaaaatttttgatctaaatatattcctgaatcaatataataggtcaattgcaagattcgacttttctctctcttctctatgag |
379 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49284186 |
attaatagaaccctaaacaaaaattttgatctaaatatattcctgaatcaatataataggtcaattgcaagattcgacttttatctctcttctctatgag |
49284087 |
T |
|
| Q |
380 |
gttcat |
385 |
Q |
| |
|
|||||| |
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|
| T |
49284086 |
gttcat |
49284081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 209 - 275
Target Start/End: Complemental strand, 49287660 - 49287594
Alignment:
| Q |
209 |
aaacctttaaattatttgacataattttagacaaaattgtgtacatgcacccgaaccaaagagattg |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
49287660 |
aaacctttaaattatttgacataattttagacaaaattgtgtacatgcacccgaaccaaggagattg |
49287594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 35612973 - 35612800
Alignment:
| Q |
20 |
atgaaccttgatttgagtttggtggtggtggtgaaaaggagggtgatggatgtgaggttgaagataaagtgggaagatatacagtgtgggt-agaccata |
118 |
Q |
| |
|
|||| |||||| |||||||||| ||||||||||||||||||| |||||| ||||| ||||||| |||||||||||||||| ||| ||| | || | || |
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| T |
35612973 |
atgatccttgacttgagtttggcggtggtggtgaaaaggaggatgatggtagtgagattgaagacaaagtgggaagatatatagtatggataagcctatg |
35612874 |
T |
|
| Q |
119 |
ataagatcagtgtatctcttcaatccagtggtcaaaaacagcctttcccatgatgggaaaaaacaacctttccc |
192 |
Q |
| |
|
|||||||||||||| ||||| ||| |||| ||||||||| ||| ||||| ||||||||| || |||||||| |
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| T |
35612873 |
ataagatcagtgtacctctttaattcagttgtcaaaaactaatttttccatggtgggaaaaatcagcctttccc |
35612800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 17151739 - 17151901
Alignment:
| Q |
20 |
atgaaccttgatttgagtttggtggtggtggtgaaaaggagggtgatggatgtgaggttgaagataaagtgggaagatatacagtgtgggt-agaccata |
118 |
Q |
| |
|
|||| |||||| |||||||||| |||||||||||||||||| |||||| ||||||||||||| | |||||||||||||| ||| ||||| || | || |
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| T |
17151739 |
atgatccttgacttgagtttggcagtggtggtgaaaaggaggatgatggtagtgaggttgaagacagagtgggaagatatatagtatgggtaagcctatg |
17151838 |
T |
|
| Q |
119 |
ataagatcagtgtatctcttcaatccagtggtcaaaaacagcctttcccatgatgggaaaaaa |
181 |
Q |
| |
|
|||||||| ||||| ||||| |||| | ||||||||||| |||||||||| ||| |||||| |
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| T |
17151839 |
ataagatcggtgtacctctttaatctaatggtcaaaaactaactttcccatggtggaaaaaaa |
17151901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 17151090 - 17151017
Alignment:
| Q |
119 |
ataagatcagtgtatctcttcaatccagtggtcaaaaacagcctttcccatgatgggaaaaaacaacctttccc |
192 |
Q |
| |
|
|||||||||||||| ||||| |||| |||||||||||| |||||||||| ||||||||| || |||||||| |
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| T |
17151090 |
ataagatcagtgtacctctttaatctagtggtcaaaaaataactttcccatggtgggaaaaaccagcctttccc |
17151017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 34306610 - 34306452
Alignment:
| Q |
20 |
atgaaccttgatttgagtttggtggtggtggtgaaaaggagggtgatggatgtgaggttgaagataaagtgggaagatatacagtgtgggtagaccataa |
119 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||| || ||||| | ||| ||||||| || |
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| T |
34306610 |
atgagccttgacttgagtttggtggtggtggtgaaaaggagagagatggtagtgaggttgaagataaagtggaaaaatatatattgtaggtagactat-- |
34306513 |
T |
|
| Q |
120 |
taagatcagtgtatctcttcaatccagtggtcaaaaacagcctttcccatgatgggaaaaaac |
182 |
Q |
| |
|
| ||||||||||||||| |||||| || | |||||| |||| |||| ||||||||||| |
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|
| T |
34306512 |
--atatcagtgtatctctttaatccaatgataaaaaactaactttttcatggtgggaaaaaac |
34306452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 63
Target Start/End: Original strand, 2523295 - 2523326
Alignment:
| Q |
32 |
ttgagtttggtggtggtggtgaaaaggagggt |
63 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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|
| T |
2523295 |
ttgagtttggtggtggtggtgaaaaggagggt |
2523326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 8383930 - 8383986
Alignment:
| Q |
71 |
gtgaggttgaagataaagtgggaagatatacagtgtgggtagaccataataagatca |
127 |
Q |
| |
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||||||||||||| ||||| || | ||||| |||||| | ||||||||||||||||| |
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| T |
8383930 |
gtgaggttgaagacaaagttgggaaatatatagtgtgtgcagaccataataagatca |
8383986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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