View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21624_high_13 (Length: 385)
Name: NF21624_high_13
Description: NF21624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21624_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 13484100 - 13483848
Alignment:
| Q |
18 |
acaatagatgtggtttcatcctcaaagttgaagacacccatgatgataatgaattataaatttctaatt----tatgaaataacaaactattaataagtt |
113 |
Q |
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| T |
13484100 |
acaatagatgtggtttcatcctcaaagttgaagacacccatgatgataatgaattataaatttctaattaatgtatgaaataacaaactattaataagtt |
13484001 |
T |
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| Q |
114 |
aattgtttgcctgtgtgatttattagtggagttcactcttgtatttataggaactgaagatgtattgtttagactttggatgatgatgatgatgtgtaat |
213 |
Q |
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| T |
13484000 |
aattgtttgcctgtgtgatttattagtggagttcactcttgtatttataggaactgaagatgtattgtttagactttggatgatgatgatgatgtgtaat |
13483901 |
T |
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| Q |
214 |
actaggtcgttaggcca-nnnnnnnctcattgtgacgtgacataaatgtgaat |
265 |
Q |
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| T |
13483900 |
acaaggtcgttaggccattttttttctcattgtgacgtgacataaatttgaat |
13483848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 13489825 - 13489488
Alignment:
| Q |
18 |
acaatagatgtggtttcatcctcaaagttgaagacacccatgatgataatgaattataaatttctaatt----tatgaaataacaaactattaataagtt |
113 |
Q |
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| T |
13489825 |
acaatagatgtggtttcatcctcaaagttgaagacacccatgatgataatgaattataaatttctaattaatgtatgaaataacaaactattaagaagtt |
13489726 |
T |
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| Q |
114 |
aattgtttgcctgtgtgatttattagtggagttcactcttgtatttataggaactgaagatgtattgtttagact------------ttggatgatgatg |
201 |
Q |
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| T |
13489725 |
aattgtttgcctgtgtgatttattagtggagttcactcttgtatttataggaaaagaagatgtatagtttagactttagataggccattagatgatgatg |
13489626 |
T |
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| Q |
202 |
atgatgtgtaatactaggtcgttaggccannnnnnnctcattgtgacgtgacat-aaatgtgaatactatttttaatt-tttgagtttggatgatattat |
299 |
Q |
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| T |
13489625 |
atgatgtgtaaaacaaggtcgttgggcta-ttttttctcattgtgacgtgacataaaatttgaatactatttttaattgtatgagtttggacgatattat |
13489527 |
T |
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| Q |
300 |
ttttaaagaaaactatattatttggactaacaaaattattg |
340 |
Q |
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| T |
13489526 |
ttttaaagaaaac--tattatttggactaacaaaattattg |
13489488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 285 - 353
Target Start/End: Complemental strand, 13483854 - 13483786
Alignment:
| Q |
285 |
tttggatgatattatttttaaagaaaactatattatttggactaacaaaattattgtatctactattaa |
353 |
Q |
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| T |
13483854 |
tttgaatgatattatttttaaagaaaactatattatttggactaacaaaattattgtatctactattaa |
13483786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 13508393 - 13508345
Alignment:
| Q |
139 |
gtggagttcactcttgtatttataggaactgaagatgtattgtttagac |
187 |
Q |
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| T |
13508393 |
gtggagttgagtctagtatttatagtaactgaagatgtattgtttagac |
13508345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 13508525 - 13508480
Alignment:
| Q |
18 |
acaatagatgtggtttcatcctcaaagttgaagacacccatgatga |
63 |
Q |
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| T |
13508525 |
acaatagaggtggtttcatcctcaaaattgaaaacacccattatga |
13508480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 13514654 - 13514618
Alignment:
| Q |
154 |
gtatttataggaactgaagatgtattgtttagacttt |
190 |
Q |
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| T |
13514654 |
gtatttataggaactgaagttgtattatttagacttt |
13514618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 13514773 - 13514733
Alignment:
| Q |
22 |
tagatgtggtttcatcctcaaagttgaagacacccatgatg |
62 |
Q |
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| T |
13514773 |
tagaggtggtttcatcctcaaaattgaacacacccatgatg |
13514733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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