View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21624_high_15 (Length: 336)
Name: NF21624_high_15
Description: NF21624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21624_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 320
Target Start/End: Complemental strand, 14788539 - 14788236
Alignment:
| Q |
16 |
caataaggacaaagtttatttgaagcaacaatgaaagaataatattagaaaatagactcatgctaacaagtgcttgttatgaaggtaaaaatggaaataa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14788539 |
caataaggacaaagtttatttgaagcaacaatgaaaaaataatattagaaaatagactcatgctaacaagtgcttgttatgaaggtaaaaaaggaaataa |
14788440 |
T |
|
| Q |
116 |
gtgatatattataagtaaaaaatgtcaatttctaaagttgtaaggtgtaaaatacatctttctcaaggtgtaaacttcttaaccaaaacatcatatgggt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14788439 |
gtgatatattataagtaaaaaatgtcaatttctaaagttgtaaggtgtaaaatacatctttctcaaggtgtaaacttcttaaccaaaacatcatatgggt |
14788340 |
T |
|
| Q |
216 |
taaaaagtttcgacatgaaaatacaacctagatactnnnnnnnnnnntttgatacactaatattccatgaagcatggacaccttcaaaattaatcgtgtc |
315 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14788339 |
taaaaagtttcgacatgaaaatacaacctagatact-aaaaaaaaaatttgatacactaatattcaatgaagcatggacaccttcaaaattaatcgtgtt |
14788241 |
T |
|
| Q |
316 |
ttcat |
320 |
Q |
| |
|
||||| |
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|
| T |
14788240 |
ttcat |
14788236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 162 - 320
Target Start/End: Complemental strand, 15229430 - 15229273
Alignment:
| Q |
162 |
gtaaaatacatctttctcaaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaacctagatactnnnnnnnnnn |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15229430 |
gtaaaatacatctttctcaaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaacctagatact-aaaaaaaaa |
15229332 |
T |
|
| Q |
262 |
ntttgatacactaatattccatgaagcatggacaccttcaaaattaatcgtgtcttcat |
320 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
15229331 |
atttgatacactaatattcaatgaagcatggacaccttcaaaattaatcgtgttttcat |
15229273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 162 - 316
Target Start/End: Complemental strand, 15239555 - 15239402
Alignment:
| Q |
162 |
gtaaaatacatctttctcaaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaacctagatactnnnnnnnnnn |
261 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15239555 |
gtaaaatacatctttctcaaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaacctagatact-aaaaataaa |
15239457 |
T |
|
| Q |
262 |
ntttgatacactaatattccatgaagcatggacaccttcaaaattaatcgtgtct |
316 |
Q |
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||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
15239456 |
atttgatacattaatattgaatgaagcatggacacctccaaaattaatcgtgtct |
15239402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 58 - 316
Target Start/End: Original strand, 17544475 - 17544732
Alignment:
| Q |
58 |
tattagaaaatagactcatgctaacaagtgcttgttatgaaggtaaaaatggaaataagtgatatattataagtaaaaaatgtcaatttctaaagttgta |
157 |
Q |
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|
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17544475 |
tattagaacatagactcatgctaacaagtgcttgttatgaaggtaaaaaaggaaataagtgatatattataagtaaaaaatgtcaatttctaaagttgta |
17544574 |
T |
|
| Q |
158 |
aggtgtaaaatacatctttctcaaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaacctagatactnnnnnn |
257 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17544575 |
aggtgtaaaatacatctttctcaaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaacctagatact-aaaaa |
17544673 |
T |
|
| Q |
258 |
nnnnntttgatacactaatattccatgaagcatggacaccttcaaaattaatcgtgtct |
316 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| |
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|
| T |
17544674 |
taaaatttgatacattaatattgaatgaagcatggacacctccaaaattaatcgtgtct |
17544732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 17544007 - 17544057
Alignment:
| Q |
16 |
caataaggacaaagtttatttgaagcaacaatgaaagaataatattagaaa |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17544007 |
caataaggacaaagtttatttgaagcaacaatgaaagaataatattagaaa |
17544057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 9045229 - 9045163
Alignment:
| Q |
88 |
cttgttatgaaggtaaaaatggaaataagtgatatattataagtaaaaaatgtcaatttctaaagtt |
154 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||| ||| |||||||||| || ||||||||||||| |
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|
| T |
9045229 |
cttgttaagaaggtaaaaatagaaataagtgataaatttaaagtaaaaaaagttaatttctaaagtt |
9045163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 154
Target Start/End: Original strand, 35507145 - 35507203
Alignment:
| Q |
96 |
gaaggtaaaaatggaaataagtgatatattataagtaaaaaatgtcaatttctaaagtt |
154 |
Q |
| |
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|||| ||||||||||||||||||||| ||| | |||||||| ||||||||||| |||| |
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| T |
35507145 |
gaagctaaaaatggaaataagtgataaattcaaggtaaaaaaagtcaatttctagagtt |
35507203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 47458 - 47506
Alignment:
| Q |
73 |
tcatgctaacaagtg-cttgttatgaaggtaaaaatggaaataagtgat |
120 |
Q |
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||||||||||||||| ||||||| |||| ||||||||||| |||||||| |
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| T |
47458 |
tcatgctaacaagtgacttgttaagaagttaaaaatggaattaagtgat |
47506 |
T |
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