View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21624_high_18 (Length: 271)
Name: NF21624_high_18
Description: NF21624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21624_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 7289065 - 7289324
Alignment:
| Q |
1 |
tcatgttgatattgctactcacttttacggttacgactgggctagttttagacagaacactcataagacaaaaaagttagattatttttcatttaggagt |
100 |
Q |
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| T |
7289065 |
tcatgttgatattgctattcacttttacggttaccactgggctagttttagacagaacactcataagacaaaaaagttagattgtttttcatttaggagt |
7289164 |
T |
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| Q |
101 |
gattttaaatctcatgcagatttgatcttgcccatttcaaggaatcttccattcaatgatgggttctggtttgaaattcaaaattcaactgatgtgggtt |
200 |
Q |
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| T |
7289165 |
gattttaaatctcatgcagatttgatcttgcccatttcaaggaatcttccattcaatgatgggttctggtttgaaattcaaaattcaactgatgtgggtt |
7289264 |
T |
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| Q |
201 |
tgaaggaatttgtggttcctcaaaatgcttatagggctgttttagaagtgtatgtttctt |
260 |
Q |
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| T |
7289265 |
tgaaggaatttgtggttcctcaaaatgcttatagggctgttttagaagtgtatgtttctt |
7289324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 54 - 258
Target Start/End: Original strand, 7292870 - 7293068
Alignment:
| Q |
54 |
agaacactcataagacaaaaaagttagattatttttcatttaggagtgattttaaatctcatgcagatttgatcttgcccatttcaaggaatcttccatt |
153 |
Q |
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| T |
7292870 |
agaagactcataagacaaaaaagtttgattctttagcatttaggagtggtttt------catgcagatttgatcttgcccatttcaaggaatctcccaaa |
7292963 |
T |
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| Q |
154 |
caatgatgggttctggtttgaaattcaaaattcaactgatgtgggtttgaaggaatttgtggttcctcaaaatgcttatagggctgttttagaagtgtat |
253 |
Q |
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| T |
7292964 |
aaatgatgtgttgtggtttgaaattcaaaattcaactgatgtgggtgtaaaggaatttgtggttcctcaaaatgcttatagggctgtgttagaagtgtat |
7293063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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