View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21624_high_24 (Length: 241)
Name: NF21624_high_24
Description: NF21624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21624_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 33903692 - 33903897
Alignment:
| Q |
19 |
atggtattcagattgaataatcaacttgtcaattgtatatttgtaactataataactactaggcttgtttgttgggagcaacattttgttatgttgcaat |
118 |
Q |
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| T |
33903692 |
atggtattcaaattgaatgatcaacttgtcatttgtaaatttgtaagtataataattagt---cttgtttgttgggagcaacattttgttatgttgcaat |
33903788 |
T |
|
| Q |
119 |
tgtaatttcaatgtaaatgaaaaagtagttttttctatt-nnnnnnnngtaattagttttagtaaaacaagatgtttaatttcaatattgatcttgaata |
217 |
Q |
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| T |
33903789 |
tgtaatttcaatgtaaatgaaaaagtagttttttctattaaaaaaaaagtaattagttttagtaaaacaagatgtttaatttcaatattgatcttgaata |
33903888 |
T |
|
| Q |
218 |
cgaagaata |
226 |
Q |
| |
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||||||||| |
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| T |
33903889 |
cgaagaata |
33903897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 33920682 - 33920805
Alignment:
| Q |
19 |
atggtattcagattgaataatcaacttgtcaattgtatatttgtaactataataactactaggcttgtttgttgggagcaacattttgttatgttgcaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
33920682 |
atggtattcagattgaataatcaacttgtcaattgtatatttgtaactataataacta---ggcttgtttattgggagcaacattttgttatgttgcaat |
33920778 |
T |
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| Q |
119 |
tgtaatttcaatgtaaatgaaaaagta |
145 |
Q |
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|||||||||||||||||| |||||||| |
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| T |
33920779 |
tgtaatttcaatgtaaattaaaaagta |
33920805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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