View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21624_high_3 (Length: 520)
Name: NF21624_high_3
Description: NF21624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21624_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 141 - 457
Target Start/End: Complemental strand, 12351327 - 12351011
Alignment:
| Q |
141 |
tcctcattatcatccttaatgttccaactcccaacctaacaccaacaattaccaccatgtattaccgacaccaacaaccacccacatcatagtcacctta |
240 |
Q |
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| T |
12351327 |
tcctcattatcatccttaatgttccaactcccagcctaacaccaacaatcaccaccatgtattactgacaccaacaaccacccacatcatagtcacctta |
12351228 |
T |
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| Q |
241 |
tgacaccaataccaacaacctgcattgttaatggttacaaaactcaaccaagtggccaacaccactttcctccatgaagggtattcgaacatgaattctt |
340 |
Q |
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| T |
12351227 |
tgacaccaataccaacaacctccattgttaatggttacaaaacgcaaccaagtggccaacaccactttcctccatgaagggtattcgaacatgaattctt |
12351128 |
T |
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| Q |
341 |
gaaaccaggatcaacaaccaccacgctgacctacggtcaccacgtgatgataaaacgaccaatatgttcaacataaccaaaaccaaaagatctaacacct |
440 |
Q |
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|||| || |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12351127 |
gaaatcaagatcaacaaccaccactctgatctacggtcaccacgtgatgataaaacgaccaatatgttcaacataaccaaaaccaaaagatctaacacct |
12351028 |
T |
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| Q |
441 |
cgctgactcaagattat |
457 |
Q |
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| T |
12351027 |
cgctgactcaagattat |
12351011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 12351460 - 12351376
Alignment:
| Q |
8 |
gacatcatcaccaacccaaaaacttgaaactagacactaactttcgacgagatggacccaaatctgaggtcaccacaagtagaca |
92 |
Q |
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| T |
12351460 |
gacaccataaccaacccaaaaacttgaaactagacactaactttcgacgagatggacccaaatctgaggtcagcacaagtagaca |
12351376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 451 - 520
Target Start/End: Original strand, 12350936 - 12351006
Alignment:
| Q |
451 |
agattatcgtcagttttgcgattcttttgtgtgttgttgtttaatctggt-cttcaggatccgagtatgct |
520 |
Q |
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| T |
12350936 |
agattatcgtcagtgttgcgattcttttgtgtgttattgtgtaatctggtccttcacgatccgagtatgct |
12351006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 30127214 - 30127181
Alignment:
| Q |
17 |
accaacccaaaaacttgaaactagacactaactt |
50 |
Q |
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| T |
30127214 |
accaacccaaaaacttgaaactagacactaactt |
30127181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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