View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21624_high_34 (Length: 206)
Name: NF21624_high_34
Description: NF21624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21624_high_34 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 46448730 - 46448538
Alignment:
| Q |
14 |
acttctttattagatgtccacaattgtgtttttaggattctttgcaagtcattggtatctccacaattttattttatatcacaaattccattagtnnnnn |
113 |
Q |
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| T |
46448730 |
acttctttattagatgtccacaattgtgtttttaggattctttgcaagtcattggtatctccacaattttattttatatcacgaattccattagtaaaaa |
46448631 |
T |
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| Q |
114 |
nnnnnnnnnnnnnnnnnnnncaaggcaacaaatatttcaggtcacaatcacatgacaactcactgtgcatccaagagtaacagtatttaggga |
206 |
Q |
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| T |
46448630 |
aagtattccaaaataaaaaacaaggcaacaaatatttcaggtcacaatcacatgacaactcactgtgcatccaagagtaacagtatttaggga |
46448538 |
T |
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