View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21624_high_5 (Length: 482)
Name: NF21624_high_5
Description: NF21624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21624_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 48277717 - 48277254
Alignment:
| Q |
1 |
gcgtcgtcaataccacttgcatacttttcgaatacatccatacctttttgctatcgaatcattccttgaatttttgtcttgaaatccttactttatttat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48277717 |
gcgtcgtcaataccacttgcatacttttcgaatacatccataactttttgctatcgaatcattccttgaatttttgtcttgaaatccttactttatttat |
48277618 |
T |
|
| Q |
101 |
ttgtttatcggttcaaataaatatagaattatataacaaatgtaggtaatcgattaaattaaaatctttgtaaatacaagaacattacatatatatcatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48277617 |
ttgtttatcggttcaaataaatatagaattatataacaaatgtaggtaatcaattaaattaaaatctttgtaaatacaagaacattacatatatatcatg |
48277518 |
T |
|
| Q |
201 |
tttcattctggcgacgtgcatctggataaggattagaaaacctggtagaaaaacttggaggcaaatattcttcatcttcactttgagccccactattgaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
48277517 |
tttcattctggcgacgtgcatctggataaggattagaaaacctggtagaaaaacttggaggcaaatattcttcatcttcactttgagccccactattaaa |
48277418 |
T |
|
| Q |
301 |
attaagagcataactatgtgcatcatattgaaacctatgcttttgttgttttttcccatacccacttatttttctaagaaacgttttccacttaggacca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48277417 |
attaagagcataactatgtgcatcatattgaaacctatgcttttgttgttttttcccatacccacttatttttctaagaaacgttttccacttaggacca |
48277318 |
T |
|
| Q |
401 |
gcaattacttctgaagtctccttcatcttcttcaacttgtccatcatccatgtctctgctcctc |
464 |
Q |
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| T |
48277317 |
gcaatcacttctgaagtctccttcatcttcttcaacttgtccatcatccatgtctcttctcctc |
48277254 |
T |
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Back To:
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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 272 - 439
Target Start/End: Complemental strand, 25246944 - 25246777
Alignment:
| Q |
272 |
tcatcttcactttgagccccactattgaaattaagagcataactatgtgcatcatattgaaacctatgcttttgttgttttttcccatacccacttattt |
371 |
Q |
| |
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||||||||||| |||||||||||| |||| || |||||||| || ||| |||||||||| ||| || ||| ||||| || || |||||| || || | |
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| T |
25246944 |
tcatcttcactctgagccccactactgaagttgagagcatagctgtgttcatcatattggaacttacccttctgttgcttcttaccatacatgctaatct |
25246845 |
T |
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| Q |
372 |
ttctaagaaacgttttccacttaggaccagcaattacttctgaagtctccttcatcttcttcaacttg |
439 |
Q |
| |
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|||||| || || |||||||||||||| ||||| ||||||||| ||| ||||||||| |||||||| |
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| T |
25246844 |
ttctaatgaatgtcttccacttaggacctgcaatcacttctgaaacctctttcatcttcctcaacttg |
25246777 |
T |
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