View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21624_high_6 (Length: 466)
Name: NF21624_high_6
Description: NF21624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21624_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 5170595 - 5170140
Alignment:
| Q |
1 |
cacattgtgtgtcctgcagcagatgccatgatgccatgcattactatttatatatcaaaattccaatgcagtagtacatcccaaatatagtaaatttttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5170595 |
cacattgtgtgtcctgcagcagatgccatgatgccatgcattactatttatatatcaaaattccaatgcagtagtacatcccaaatatagtaaatttttc |
5170496 |
T |
|
| Q |
101 |
tagtccaacaattctttgattccaccagctcctcttttgtaaattctattctattatttaacattaagaaaacaaattctattacaggcacaacctatat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5170495 |
tagtccaacaattctttgattccaccagctcctcttttgtaaattctattctattatttaacattaagaaaacaaattctattacaggcacaacc--tat |
5170398 |
T |
|
| Q |
201 |
ggcaaatgaaacatgagggttttcacgtgcgaacattcctgnnnnnnnattaatcttttctatcacgagagtccaaattgcatgccccctatcataaaag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5170397 |
ggcaaatgaaacatgagggttttcacgtgcgaacattcctg--tttttattaatcttttctatcacgagagtccaaattgcatgccccctatcataaaag |
5170300 |
T |
|
| Q |
301 |
aagagcaagtttaaatgctttgatcttgaaaaagaacggtcctcattatcaaatgtatatacattaatatatagctgcaaaaaagcttgaggaaggaact |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5170299 |
aagagcaagtttaaatgctttgatcttgaaaaagaacggtcctcattatcaaatgtatatacattaatatatagctgcaaaaaagcttgaggaaggaact |
5170200 |
T |
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| Q |
401 |
ttgctnnnnnnngccaaggacctagagagttgacatattattcatgctatcctatgcttc |
460 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5170199 |
ttgctaaaaaaagccaaggacctagagagttgacatattattcatgctatcctatgcttc |
5170140 |
T |
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