View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21624_high_7 (Length: 431)
Name: NF21624_high_7
Description: NF21624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21624_high_7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 25812595 - 25812182
Alignment:
| Q |
18 |
gagagtggtgacagaacggtagttagcaagacggtgatcgccaccgatcatgctgaagctgatgacatgacgttcatcgtctaggacttcgagacgttcg |
117 |
Q |
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| T |
25812595 |
gagagtggtgacagaacggtagttagcaagacggtgatcgccaccgatcatgctgaagctgatgacatgacgttcatcgtctaggacttcgagacgttcg |
25812496 |
T |
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| Q |
118 |
gtgctgacggcggcggggaggccggagatgacacggacttcacggagagtgccgacgttgccgtctccgaggatgacatggcagcttttgacgaagtgtt |
217 |
Q |
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| T |
25812495 |
gtgctgacggcggcggggaggccggagatgacacggacttcacggagagtgccgacgttgccgtctccgaggatgacatggcagcttttgacgaagtgtt |
25812396 |
T |
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| Q |
218 |
tgtaggcttgtggattgtcgaagcgacggactacggaccagacggtggagacgggtgcggcgatatgttggatgacggcggagcaacactggttggggga |
317 |
Q |
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| T |
25812395 |
tgtaggcttgtggattgtcgaagcgacggacgacggaccagacggtggagacgggtgcggcgatatgttggatgacggcggagcaacactggttggggga |
25812296 |
T |
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| Q |
318 |
gactgcgtgggtgtggtagcgggcgatggcgtcggggacggtggtcgttgggtttggtaacatattgtgtgattcaagaacaacttgtgctcagatggtg |
417 |
Q |
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| T |
25812295 |
gactgcgtgggtgtggtagcgggcgatggcgtcggggacggtggttgttgggtttggtaacatattttgttattcaagaacaacttgtgctcagatggtg |
25812196 |
T |
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| Q |
418 |
tacctgcaaacact |
431 |
Q |
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| T |
25812195 |
tacctgcaaacact |
25812182 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 32206791 - 32206870
Alignment:
| Q |
189 |
gatgacatggcagcttttgacgaagtgtttgtaggcttgtggattgtcgaagcgacggactacggaccagacggtggaga |
268 |
Q |
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| T |
32206791 |
gatgacttggcagcttttgacgaagtttttgtatccttgtggattttcgaagcgtcgaactacaggccatacggcggaga |
32206870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 198 - 263
Target Start/End: Original strand, 12916909 - 12916974
Alignment:
| Q |
198 |
gcagcttttgacgaagtgtttgtaggcttgtggattgtcgaagcgacggactacggaccagacggt |
263 |
Q |
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| T |
12916909 |
gcagcttttgatgaagtgtttgtagatttgcggtttgtcgaagcttcggacgacggaccagacggt |
12916974 |
T |
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