View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21624_low_13 (Length: 395)

Name: NF21624_low_13
Description: NF21624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21624_low_13
NF21624_low_13
[»] chr3 (11 HSPs)
chr3 (26-381)||(3745107-3745462)
chr3 (196-320)||(4142865-4142989)
chr3 (196-320)||(4158675-4158799)
chr3 (202-320)||(3753784-3753902)
chr3 (206-320)||(967869-967983)
chr3 (196-256)||(803952-804012)
chr3 (208-322)||(1931894-1932008)
chr3 (217-322)||(1937714-1937819)
chr3 (206-322)||(2679176-2679292)
chr3 (208-246)||(988687-988725)
chr3 (196-254)||(12132320-12132378)
[»] chr5 (4 HSPs)
chr5 (202-381)||(11081318-11081497)
chr5 (208-322)||(1428494-1428608)
chr5 (208-254)||(23764997-23765043)
chr5 (208-254)||(23814845-23814891)
[»] chr8 (2 HSPs)
chr8 (206-251)||(31145143-31145188)
chr8 (208-320)||(19727117-19727229)
[»] chr1 (2 HSPs)
chr1 (202-285)||(25611733-25611819)
chr1 (223-275)||(23896907-23896959)
[»] chr4 (1 HSPs)
chr4 (208-245)||(22672879-22672916)


Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 26 - 381
Target Start/End: Complemental strand, 3745462 - 3745107
Alignment:
Q  26 gaggataatctccattgaaaccgttaggagaatactcaaaccgtgtggagttagatgatgttatgtttgtgaaaatagagtccattggttcagataagag 125  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||||||| |||||||||||||||||    
T  3745462 gaggataatctccattgaaaccgttaggagaatattcaaaccgtgtggagttagatg---ttatgtttgtgaaaatagagtcgattggttcagataagag 3745366  T
Q  126 aatgtacttgcctaagtaacgggtgtggtcgtagagtaag---tggatgtttcgagcagtagacacatgtaactgctttttgacaaatttgggatcagat 222  Q
    ||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3745365 aatgtacttgcctaagtaacgggtgtggtcgtagagtaagaagtggatgtttcgagcagtagacacatttaactgctttttgacaaatttgggatcagat 3745266  T
Q  223 attagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgtcggaaggaagagtgg 322  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3745265 attagagaattccatgacttgcaaacacatcggaattgaaggatgaacttcaccggtagcctacataagatttctggaatgacgtcggaaggaagagtgg 3745166  T
Q  323 tggacacacaaaggtgcttacttggtacaaccgagagatgattgttgatggaagttgtt 381  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3745165 tggacacacgaaggtgcttacttggtacaaccgagagatgattgttgatggaagttgtt 3745107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 196 - 320
Target Start/End: Original strand, 4142865 - 4142989
Alignment:
Q  196 tgctttttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagattt 295  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||| |||||    
T  4142865 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaactttactggtagcctacatatgattt 4142964  T
Q  296 ctggaatgacgtcggaaggaagagt 320  Q
    |||||||||||||||||||||||||    
T  4142965 ctggaatgacgtcggaaggaagagt 4142989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 196 - 320
Target Start/End: Original strand, 4158675 - 4158799
Alignment:
Q  196 tgctttttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagattt 295  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||| ||| |||||    
T  4158675 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacattggaatcggaggatgaactttaccggtagcctacatatgattt 4158774  T
Q  296 ctggaatgacgtcggaaggaagagt 320  Q
    || ||||||||||||||||||||||    
T  4158775 ctagaatgacgtcggaaggaagagt 4158799  T

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Target: chr3; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 202 - 320
Target Start/End: Complemental strand, 3753902 - 3753784
Alignment:
Q  202 ttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaa 301  Q
    ||||| ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| |||||||||||    
T  3753902 ttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttctggaa 3753803  T
Q  302 tgacgtcggaaggaagagt 320  Q
    |||||||| ||||||||||    
T  3753802 tgacgtcgtaaggaagagt 3753784  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 206 - 320
Target Start/End: Complemental strand, 967983 - 967869
Alignment:
Q  206 caaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgac 305  Q
    ||||||| | |||||  |||||||||||||| |||||||| |||||||||||| | | || || ||| |||| ||||||| |||  |||||||||||||     
T  967983 caaatttagaatcagtgattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgag 967884  T
Q  306 gtcggaaggaagagt 320  Q
     ||| ||||||||||    
T  967883 atcgaaaggaagagt 967869  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 803952 - 804012
Alignment:
Q  196 tgctttttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatcgga 256  Q
    ||||||||| |||| |||| |||  |||||||||||||||||||||||||||| |||||||    
T  803952 tgctttttggcaaagttggcatcgcatattagagaattccatgacttgcaaacgcatcgga 804012  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 322
Target Start/End: Original strand, 1931894 - 1932008
Alignment:
Q  208 aatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgt 307  Q
    |||||||| ||||| |||||||||||| ||||||||||||| || |||||||  |  | || ||| || | ||||||| | | ||||||||||||||  |    
T  1931894 aatttggggtcagagattagagaattctatgacttgcaaacgcaccggaatctcacaaggagcttcacggatagcctacagaggatttctggaatgagat 1931993  T
Q  308 cggaaggaagagtgg 322  Q
    || ||||||||||||    
T  1931994 cgaaaggaagagtgg 1932008  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 322
Target Start/End: Original strand, 1937714 - 1937819
Alignment:
Q  217 tcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgtcggaaggaa 316  Q
    ||||| |||||||||||| ||||||||||||| || |||||||  |||| ||  || |||| ||||||| | | ||||||||||||||  ||  ||||||    
T  1937714 tcagaaattagagaattctatgacttgcaaacgcaccggaatctcaggaggagtttcaccgatagcctagagaggatttctggaatgagatcaaaaggaa 1937813  T
Q  317 gagtgg 322  Q
    ||||||    
T  1937814 gagtgg 1937819  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 322
Target Start/End: Original strand, 2679176 - 2679292
Alignment:
Q  206 caaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgac 305  Q
    ||||||| ||||| || || ||||| |||||||||||||| |||||||||| | |||||| ||| || ||| ||| |||| | |  || ||||| ||||     
T  2679176 caaattttggatcggagatcagagatttccatgacttgcagacacatcggagttgaaggaggaatttcacctgtaacctagacagtatatctgggatgag 2679275  T
Q  306 gtcggaaggaagagtgg 322  Q
    |||| ||||||||||||    
T  2679276 gtcgaaaggaagagtgg 2679292  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 246
Target Start/End: Complemental strand, 988725 - 988687
Alignment:
Q  208 aatttgggatcagatattagagaattccatgacttgcaa 246  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  988725 aatttgggatcagagattaaagaattccatgacttgcaa 988687  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 12132378 - 12132320
Alignment:
Q  196 tgctttttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatcg 254  Q
    ||||| ||| ||||||||||||||||||| ||||||||||| || ||||| || |||||    
T  12132378 tgcttcttggcaaatttgggatcagatatgagagaattccaggatttgcatacgcatcg 12132320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 202 - 381
Target Start/End: Complemental strand, 11081497 - 11081318
Alignment:
Q  202 ttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaa 301  Q
    ||||| ||||||||||||||||||| |||||| || ||||||||||||||| ||||||||||||||||||| ||||||| |||| ||| ||||||| |||    
T  11081497 ttgacgaatttgggatcagatattaaagaatttcacgacttgcaaacacattggaatcgaaggatgaacttaaccggtaacctacataggatttctagaa 11081398  T
Q  302 tgacgtcggaaggaagagtggtggacacacaaaggtgcttacttggtacaaccgagagatgattgttgatggaagttgtt 381  Q
    |||  ||||||||||||||||| ||||||| ||||||||| | || ||||| |||||| |||||||||||||||||||||    
T  11081397 tgagatcggaaggaagagtggtagacacacgaaggtgctttcctgatacaatcgagaggtgattgttgatggaagttgtt 11081318  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 322
Target Start/End: Original strand, 1428494 - 1428608
Alignment:
Q  208 aatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgt 307  Q
    |||||| ||||||  ||||||||||| |||| ||||||||  ||||||| | |||||| ||  || || ||||||||||  | ||||| || ||||| ||    
T  1428494 aatttgagatcagtgattagagaattacatgccttgcaaaggcatcggagttgaaggaggagtttcacgggtagcctatggaggatttgtgaaatgatgt 1428593  T
Q  308 cggaaggaagagtgg 322  Q
    || ||||||||||||    
T  1428594 cgaaaggaagagtgg 1428608  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 23764997 - 23765043
Alignment:
Q  208 aatttgggatcagatattagagaattccatgacttgcaaacacatcg 254  Q
    |||||||||||||| ||||||||||||||  ||||||| ||||||||    
T  23764997 aatttgggatcagaaattagagaattccaccacttgcacacacatcg 23765043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 23814845 - 23814891
Alignment:
Q  208 aatttgggatcagatattagagaattccatgacttgcaaacacatcg 254  Q
    |||||||||||||| ||||||||||||||  ||||||| ||||||||    
T  23814845 aatttgggatcagaaattagagaattccaccacttgcacacacatcg 23814891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 31145143 - 31145188
Alignment:
Q  206 caaatttgggatcagatattagagaattccatgacttgcaaacaca 251  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  31145143 caaatttgggatcagatataagagaattccatgacttgcaaacaca 31145188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 208 - 320
Target Start/End: Complemental strand, 19727229 - 19727117
Alignment:
Q  208 aatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgt 307  Q
    |||||| ||||||| |||||||||||| | ||||||||||||||||||||  | | || ||| || || |||||||||  ||  |||||||||||||  |    
T  19727229 aatttgtgatcagagattagagaattcaacgacttgcaaacacatcggaactgcaagaggaatttcacgggtagcctacttagaatttctggaatgagat 19727130  T
Q  308 cggaaggaagagt 320  Q
    || ||||||||||    
T  19727129 cgaaaggaagagt 19727117  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 202 - 285
Target Start/End: Original strand, 25611733 - 25611819
Alignment:
Q  202 ttgacaaatttgggatca---gatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagccta 285  Q
    |||||||| |||||||||   |||||||||||||||||||||||||| || || | |||| |||||| |||||||||||| ||||||    
T  25611733 ttgacaaaattgggatcattcgatattagagaattccatgacttgcagacgcaacagaattgaaggaggaacttgaccgggagccta 25611819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 23896907 - 23896959
Alignment:
Q  223 attagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgac 275  Q
    ||||||||||||||||||||||| || || |||||| | |||| |||||||||    
T  23896907 attagagaattccatgacttgcagacgcagcggaattgtaggaggaacttgac 23896959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 245
Target Start/End: Original strand, 22672879 - 22672916
Alignment:
Q  208 aatttgggatcagatattagagaattccatgacttgca 245  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  22672879 aatttgcgatcagagattagagaattccatgacttgca 22672916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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