View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21624_low_17 (Length: 330)
Name: NF21624_low_17
Description: NF21624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21624_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 11 - 313
Target Start/End: Original strand, 130281 - 130583
Alignment:
| Q |
11 |
aagaatatgtgaatgacgaattcaaaagaagctttcttcatctccgtaaggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatca |
110 |
Q |
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| T |
130281 |
aagaaaatgtgaatgacgaattcaaaagaagctttcttcatctccgtaaggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatca |
130380 |
T |
|
| Q |
111 |
caatatcctcaatacgctctaagtacatttctaatacattgtgaccattgataggagatgatactagttgtttaaaacgtccgcgttctttatgtagaat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
130381 |
caatatcctcaatacgctctaagtacatttctaatacattgtgaccattgataggagatgatactagttgtttaaaacgtccgcgttctttatgtagaat |
130480 |
T |
|
| Q |
211 |
cttactatcgcctaattcaagggcggattttggataaccaatcttaaaagtcacttcatcaattaggactttcttgcatatagcaggtgcaatgacaatg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
130481 |
cttactatcgcctaattcaagggcggattttggataaccaatcttaaaagtcacttcatctattaggactttcttgcatatagcaggtgcaatgacaatg |
130580 |
T |
|
| Q |
311 |
atg |
313 |
Q |
| |
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||| |
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| T |
130581 |
atg |
130583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 11 - 313
Target Start/End: Original strand, 150114 - 150416
Alignment:
| Q |
11 |
aagaatatgtgaatgacgaattcaaaagaagctttcttcatctccgtaaggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatca |
110 |
Q |
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| T |
150114 |
aagaaaatgtgaatgacgaattcaaaagaagcttttctcatctccataaggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatca |
150213 |
T |
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| Q |
111 |
caatatcctcaatacgctctaagtacatttctaatacattgtgaccattgataggagatgatactagttgtttaaaacgtccgcgttctttatgtagaat |
210 |
Q |
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| T |
150214 |
caatatcctcaatacgctctaagtacatttctaatacattccgaccaatgataggagccgcgactagtcgtttaaaacgtccattttcactatttagtaa |
150313 |
T |
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| Q |
211 |
cttactatcgcctaattcaagggcggattttggataaccaatcttaaaagtcacttcatcaattaggactttcttgcatatagcaggtgcaatgacaatg |
310 |
Q |
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|||||| | ||| |||| ||| | ||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
150314 |
cttactttttgctagttcagtggcagcttttggataaccaattttaaaggtcacttcatcaattaagactttcttgcatatagcaggtgcaatgacaatg |
150413 |
T |
|
| Q |
311 |
atg |
313 |
Q |
| |
|
||| |
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| T |
150414 |
atg |
150416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 10304485 - 10304346
Alignment:
| Q |
11 |
aagaatatgtgaatgacgaattcaaaagaagctttcttcatctccgtaaggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatca |
110 |
Q |
| |
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||||| |||||||||| ||||| |||||||||||| |||||||| ||||||||||||||||||||||| || || |||||||||| ||||||||||| |
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| T |
10304485 |
aagaaaatgtgaatgatgaatttaaaagaagcttttctcatctccacgaggaactcaacagggtgtttcatactggataattcttctaacttgttgatca |
10304386 |
T |
|
| Q |
111 |
caatatcctcaatacgctctaagtacatttctaatacatt |
150 |
Q |
| |
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||||||| |||||||| |||||||| || |||||||||| |
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| T |
10304385 |
caatatcttcaatacgttctaagtattttactaatacatt |
10304346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 313
Target Start/End: Complemental strand, 10304258 - 10304183
Alignment:
| Q |
238 |
ttttggataaccaatcttaaaagtcacttcatcaattaggactttcttgcatatagcaggtgcaatgacaatgatg |
313 |
Q |
| |
|
||||||||||||| |||||| | || |||||||| || ||||||||||||||| |||||||||||||||||||| |
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| T |
10304258 |
ttttggataaccatgcttaaagtttacatcatcaatcagaactttcttgcatatatcaggtgcaatgacaatgatg |
10304183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 892474 - 892416
Alignment:
| Q |
59 |
aggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatcacaatatc |
117 |
Q |
| |
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|||||||||| |||||||| |||| | || ||||||||||||||||||||||||||||| |
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| T |
892474 |
aggaactcaagagggtgttccatgatggataattcttctagcttgttgatcacaatatc |
892416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 43 - 313
Target Start/End: Original strand, 3959369 - 3959639
Alignment:
| Q |
43 |
tttcttcatctccgtaaggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatcacaatatcctcaatacgctctaagtacatttct |
142 |
Q |
| |
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|||| ||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| | |
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| T |
3959369 |
tttcctcatctctttaagaaactcaacagggtgtttcatgctagacaattcttcaagcttgttgatcacaatatcctcaatacgctctagatacattgtt |
3959468 |
T |
|
| Q |
143 |
aatacattgtgaccattgataggagatgatactagttgtttaaaacgtccgcgttctttatgtagaatcttactatcgcctaattcaagggcggattttg |
242 |
Q |
| |
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||||||||| ||| ||||||| | |||||| |||| ||||||||| |||| |||| ||| | | || | | ||| | || | || ||||| |
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| T |
3959469 |
gatacattgttaccggcaataggagccgtgactagtcgttttaaacgtccgtgttcattatttagtaccctattgtatgctagtacagtgatggcttttg |
3959568 |
T |
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| Q |
243 |
gataaccaatcttaaaagtcacttcatcaattaggactttcttgcatatagcaggtgcaatgacaatgatg |
313 |
Q |
| |
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||||||||| |||||| || ||||||||| |||||||||||||||| ||||| ||| |||||||||||||| |
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| T |
3959569 |
gataaccaagcttaaaggttacttcatcatttaggactttcttgcacatagctggtacaatgacaatgatg |
3959639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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