View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21624_low_18 (Length: 274)
Name: NF21624_low_18
Description: NF21624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21624_low_18 |
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| [»] scaffold0430 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 244
Target Start/End: Complemental strand, 30248732 - 30248495
Alignment:
| Q |
7 |
acatcatcaaaatgaacgcaaaggttccaccaataatccaataataacataaaaatcccaaaccgtcctaatcacaacaccactaaacaagactcaaaaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||| |||||||| |||||||||||||||||| |||| |
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| T |
30248732 |
acatcatcaaaatgaacgcaaaggttccaccaataaaacaataataacataaaaaccccacaccgtcttaatcacagcaccactaaacaagactccaaaa |
30248633 |
T |
|
| Q |
107 |
gtaagtggtaaaagacgagtaggcaccatatccatccttgaaaaactcacggcaaatatgcgtcatcaacctacaagtctgcaccacaagggcgtagaca |
206 |
Q |
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||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||| |
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| T |
30248632 |
gtaagcggtaaaatacgagtaggcaccaaatccatccttgaaaaactcacggcaaatatgcgtcatcaacctgcaagtatgcaccacaagggcgtggaca |
30248533 |
T |
|
| Q |
207 |
tccaacccgcaacacgtagtgtgagatatataatcaac |
244 |
Q |
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| T |
30248532 |
ttcaacccgcaacacgtagtgtgagatatataatcaac |
30248495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0430 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0430
Description:
Target: scaffold0430; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 10273 - 10024
Alignment:
| Q |
7 |
acatcatcaaaatgaacgcaaaggttccaccaataatccaataataacataaaaatcccaaaccgtcctaatcacaacaccactaaacaagactcaaaaa |
106 |
Q |
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||||||||||||||||| ||| ||||||| ||| ||| |||||||||||||||| | ||||| |||||||||| ||||||| | ||| ||||| |||| |
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| T |
10273 |
acatcatcaaaatgaacacaa-ggttccatcaacaatataataataacataaaaacctcaaactgtcctaatcagaacaccattgtacacgactccaaaa |
10175 |
T |
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| Q |
107 |
gtaagtggtaaaagacgagtaggcaccatatccatccttgaaaaactcacggcaaatatgcgtcatcaacctacaagtctgcaccacaagggcgtagaca |
206 |
Q |
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| T |
10174 |
gtaagcggtaaaaggtgagtaggctccaaagccatcctcgaaaa-ctcacggcaaatatgcgtcctcaacctgcaagactacaccacaagggcgtaagca |
10076 |
T |
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| Q |
207 |
tccaacccgcaacacgtagtgtgagatatataatcaacatagagaaaatatg |
258 |
Q |
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|||||||||||||| |||| ||||||||||||| ||||||||||||||||| |
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| T |
10075 |
tccaacccgcaacatgtaggatgagatatataattaacatagagaaaatatg |
10024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 7 - 255
Target Start/End: Complemental strand, 16217592 - 16217345
Alignment:
| Q |
7 |
acatcatcaaaatgaacgcaaaggttccaccaataatccaataataacataaaaatccc-aaaccgtcctaatcacaacaccactaaacaagactcaaaa |
105 |
Q |
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|
||||||||||||||||| ||||||| ||| ||| ||| | ||||||||||||||| ||| |||| ||||||| | | |||||||| ||||||||| | | |
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| T |
16217592 |
acatcatcaaaatgaacacaaaggt-ccatcaacaatacgataataacataaaaaaccccaaactatcctaattagagcaccactagacaagactccata |
16217494 |
T |
|
| Q |
106 |
agtaagtggtaaaagacgagtaggcaccatatccatccttgaaaaactcacggcaaatatgcgtcatcaacctacaagtctgcaccacaagggcgtagac |
205 |
Q |
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|||||| |||||||||||||||||| || | ||||| |||||||||| || || ||||| || ||||||| ||||||| |||||||||||||||| | |
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| T |
16217493 |
agtaagcggtaaaagacgagtaggcttca-agccatctgcgaaaaactcatggaaactatgcatcctcaacctgcaagtctacaccacaagggcgtaggc |
16217395 |
T |
|
| Q |
206 |
atccaacccgcaacacgtagtgtgagatatataatcaacatagagaaaat |
255 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
16217394 |
gtccaacccgcaacacgtagggtgagatatataatcaacatagagaaaat |
16217345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 256
Target Start/End: Complemental strand, 30613822 - 30613605
Alignment:
| Q |
39 |
ataatccaataataacataaaaatccc-aaaccgtcctaatcacaacaccactaaacaagactcaaaaagtaagtggtaaaagacgagtaggcaccatat |
137 |
Q |
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|||||||||||| ||||||| |||||| |||| ||||| ||| | ||||||| | ||||||||||| | ||||||||||| |||||||||| |||| |
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| T |
30613822 |
ataatccaataagaacataacaatccccaaactatcctagtcagagaaccactagataagactcaaaaggaaagtggtaaaacacgagtaggctccatgg |
30613723 |
T |
|
| Q |
138 |
ccatccttgaaaaactcacggcaaatatgcgtcatcaacctacaagtctgcaccacaagggcgtagacatccaacccgcaacacgtagtgtgagatatat |
237 |
Q |
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||||||| |||||||||||||||| | ||| ||| ||| |||||| |||||||||||||||| | ||| | |||||||||||| || |||||||| |
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| T |
30613722 |
ccatcctcgaaaaactcacggcaatcaaatgtcctcatcctgaaagtctacaccacaagggcgtaggcgtcc-attcgcaacacgtagggtaagatatat |
30613624 |
T |
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| Q |
238 |
aatcaacatagagaaaata |
256 |
Q |
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|||||| |||||| ||||| |
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| T |
30613623 |
aatcaatatagaggaaata |
30613605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 17365573 - 17365451
Alignment:
| Q |
7 |
acatcatcaaaatgaacgcaaaggttccaccaataatccaataataacataaaaatcccaaaccgtcctaatcacaacaccactaaacaagactcaaaaa |
106 |
Q |
| |
|
||||||||||||||||| ||| ||||||| ||| ||||||||||||||||||||| ||||||| ||||||||| | ||||||||||||||||| ||| |
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| T |
17365573 |
acatcatcaaaatgaacacaa-ggttccatcaacaatccaataataacataaaaaccccaaactatcctaatcagagaaccactaaacaagactccaaag |
17365475 |
T |
|
| Q |
107 |
gtaagtggtaaaagacgagtaggc |
130 |
Q |
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||||| |||||||| ||||||||| |
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| T |
17365474 |
gtaagcggtaaaaggcgagtaggc |
17365451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 17365412 - 17365363
Alignment:
| Q |
207 |
tccaacccgcaacacgtagtgtgagatatataatcaacatagagaaaata |
256 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
17365412 |
tccaacccgcaacacgtagtgtcagatatataatcaacatagaggaaata |
17365363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 3414194 - 3414128
Alignment:
| Q |
112 |
tggtaaaagacgagtaggcaccatatccatccttgaaaaactcacggcaaatatgcgtcatcaacct |
178 |
Q |
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|||||||||| ||||||| ||| | ||||||||| ||||||||| |||| || ||||||||||||| |
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| T |
3414194 |
tggtaaaagaggagtaggatccaaagccatccttggaaaactcactgcaattaagcgtcatcaacct |
3414128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 237
Target Start/End: Original strand, 22814137 - 22814302
Alignment:
| Q |
72 |
tcctaatcacaacaccactaaacaagactcaaaaagtaagtggtaaaagacgagtaggcaccatatccatccttgaaaaactcacggcaaatatgcgtca |
171 |
Q |
| |
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||||||||| | |||| || ||||||||| ||||| ||| |||||| | |||||||| | | | ||||| | ||||||||||| | || ||| || |
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| T |
22814137 |
tcctaatcagagtaccattagacaagactccaaaagaaagcggtaaacaatgagtaggctctaaaaccatcatcgaaaaactcacagtaactatatgttc |
22814236 |
T |
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| Q |
172 |
tcaacctacaagtctgcaccacaagggcgtagacatccaacccgcaacacgtagtgtgagatatat |
237 |
Q |
| |
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||||||| ||||||| ||||||||||| |||| ||||||| |||||| |||| |||||| |||| |
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| T |
22814237 |
tcaacctgcaagtctacaccacaagggtgtaggtgtccaacctgcaacaagtagggtgagaaatat |
22814302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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