View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21624_low_2 (Length: 660)
Name: NF21624_low_2
Description: NF21624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21624_low_2 |
 | |
|
| [»] scaffold0172 (1 HSPs) |
| | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 205 - 653
Target Start/End: Original strand, 2038367 - 2038812
Alignment:
| Q |
205 |
ttagagtccactataagaaattcatcgtcaccaagtaagagatattccactcttttctcaatctttacaattccatttcaagtttagattctttttcctt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2038367 |
ttagagtccactataagaaattcatcgtcaccaagtaagagatattccactcttttctcaatctttacaattccatttcaagtttagattctttttcctt |
2038466 |
T |
|
| Q |
305 |
attgatcttataaagtgttaagttctagaagttattttatttaggatcttgcaacatagagaagatattcttgtggtagaaatgataggattttgatcaa |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2038467 |
attgatcttataaagtgttaagttctagaagttattttatttaggatcttgcaacatagagaagatattcttgtggtagaaatgataggattttgatcaa |
2038566 |
T |
|
| Q |
405 |
tatatagtatatagggtgatacgtacactagtgccgtgaaccaatttaatgtagcctgaaaacataaaatcaagtattcaaatgagttgaatttattttt |
504 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2038567 |
tatatagtatatagggtgatacgtatactagtgccgtgaaccaatttaatgtagcctgaaaacataaaatcaagtattcaaatgagttgaatttattttt |
2038666 |
T |
|
| Q |
505 |
cttaactattagaaattactagaaacataaaagaggttcaggttcgactagaggaaaatgaattatacatgttaaaataagttgaaactgtgtcgtgtca |
604 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2038667 |
cttaactattagaaattactagaaacatagaagaggttcagattcgactaaaggaaaatgaattatacatgttaaaataagttgaaactgtgtcgtgtca |
2038766 |
T |
|
| Q |
605 |
aaaaggaaataagtaagttgtagtgagttagtattctttagtagtatct |
653 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
2038767 |
aaaaggaaataagtaagttgtagtgagt---tattctttagtagaatct |
2038812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 323 - 653
Target Start/End: Complemental strand, 29963674 - 29963350
Alignment:
| Q |
323 |
taagttctagaagttattttatttaggatcttgcaacatagagaagatattcttgtggtagaaatgataggattttgatcaatata---tagtatatagg |
419 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29963674 |
taagttctagaagttattttatttagaatcttgcaacatagagaagatattcttgtggtagaaatgataggattttgatcaatataatatagtatatagg |
29963575 |
T |
|
| Q |
420 |
gtgatacgtacactagtgccgtgaaccaatttaatgtagcctgaaaacataaaatcaagtattcaaatgagttgaatttatttttcttaactattagaaa |
519 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29963574 |
gggatacgtacactagtgccgtgaaccaatttaatgtagcttgaaaacataaaatcaagtattcaaatgagttgaattta-ttttcttaactatt----- |
29963481 |
T |
|
| Q |
520 |
ttactagaaacataaaagaggttcaggttcgactagaggaaaatgaattatacatgttaaaataagttgaaactgtgtcgtgtcaaaaaggaaataagta |
619 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29963480 |
tttttagaaacatagaagaggttcaggttcgactagaggaaaatgaattatacatgttaaaataagttgaaactgtgtcgtgtcaaaaaggaaataagta |
29963381 |
T |
|
| Q |
620 |
agttgtagtgagttagtattctttagtagtatct |
653 |
Q |
| |
|
||||||||||||| ||||||||||||| |||| |
|
|
| T |
29963380 |
agttgtagtgagt---tattctttagtagaatct |
29963350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 2038171 - 2038280
Alignment:
| Q |
4 |
atcatcactatcactattcatgtcaattattaatgatgaaccaaacaaaatcattccctattttatcgtatatcatacagggaacataagtacttttgct |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2038171 |
atcatcactatcactattcatgtcaattattaatgat-----aaccaaaatcattccctattttatcgtatatcatacagggaacacaagtacttttgct |
2038265 |
T |
|
| Q |
104 |
ttgtttcaactgcct |
118 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2038266 |
ttgtttcaactgcct |
2038280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 29963913 - 29963802
Alignment:
| Q |
4 |
atcatcactatcactattcatgtcaattattaatgatgaaccaaacaaaatcattccctattttatcgtatatcatacaggg-aacataagtacttttgc |
102 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
29963913 |
atcatcattatcactcttcatgtcaattattaatgatgaaccaaa----atcattccctattttatcgtatatcatacagggaaacacaagtacttttgc |
29963818 |
T |
|
| Q |
103 |
tttgtttcaactgcct |
118 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
29963817 |
tttgtttcaactgcct |
29963802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 29963709 - 29963671
Alignment:
| Q |
205 |
ttagagtccactataagaaattcatcgtcaccaagtaag |
243 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
29963709 |
ttagagtccactttaagaaattcatcatcaccaagtaag |
29963671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 301 - 653
Target Start/End: Complemental strand, 35261 - 34910
Alignment:
| Q |
301 |
ccttattgatct-tataaagtgttaagttctagaagttattttatttaggatcttgcaacatagagaagatattcttgtggtagaaatgataggattttg |
399 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35261 |
ccttattgatcgatataaagtgttaagttctagaagttattttatttaggatcttgcaacatagagaagatattcttgtggtagaaatgataggattttg |
35162 |
T |
|
| Q |
400 |
atcaatatatagtatatagggtgatacgtacactagtgccgtgaaccaatttaatgtagcctgaaaacataaaatcaagtattcaaatgagttgaattta |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35161 |
atcaatatatagtatatagggtgatacgtacactagtgccgtgaaccaatttaatgtagcctgaaaacataaaatcaagtattcaaatgagttgaattta |
35062 |
T |
|
| Q |
500 |
tttttcttaactattagaaattactagaaacata--aaagaggttcaggttcgactagaggaaaatgaattatacatgttaaaataagttgaaactgtgt |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35061 |
-ttttcttaactattagaaattactagaaacatatggaagaggttcatgttcgactagaggaaaatgaattatacatgttaaaataagttgaaactgtgt |
34963 |
T |
|
| Q |
598 |
cgtgtcaaaaaggaaataagtaagttgtagtgagttagtattctttagtagtatct |
653 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
34962 |
cgtgtcaaaaaggaaataagtaagttgtagtgagt---tattctttagtagaatct |
34910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 8e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 34518645 - 34518532
Alignment:
| Q |
4 |
atcatcactatcactattcatgtcaattattaatgatgaaccaaacaaaatcattccctattttatcgtatatcatacagggaacataagtacttttgct |
103 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||| |||| || |||||||||||||||||||||||| |||||||||||||||| |||||| |||||| |
|
|
| T |
34518645 |
atcatcattatcactcttcatgtcaattattaataatgatg-aaccaaaatcattccctattttatcgtttatcatacagggaacacaagtacctttgct |
34518547 |
T |
|
| Q |
104 |
ttgtttcaactgcct |
118 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
34518546 |
ttgtttcaactgcct |
34518532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 28 - 118
Target Start/End: Complemental strand, 188903 - 188817
Alignment:
| Q |
28 |
aattattaatgatgaaccaaacaaaatcattccctattttatcgtatatcatacagggaacataagtacttttgctttgtttcaactgcct |
118 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
188903 |
aattattaatgatgaaccaga----atcattccctattttatcgtatatcatagagggaacacaagtacttttgctttgtttcaactgcct |
188817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 12539084 - 12539015
Alignment:
| Q |
49 |
caaaatcattccctatttt-atcgtatatcatacagggaacataagt-acttttgctttgtttcaactgc |
116 |
Q |
| |
|
||||||||||||||||||| |||| ||||||| |||| ||| |||| | |||||||||||||||||||| |
|
|
| T |
12539084 |
caaaatcattccctatttttatcgagtatcatatagggcacacaagttatttttgctttgtttcaactgc |
12539015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University