View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21624_low_20 (Length: 268)
Name: NF21624_low_20
Description: NF21624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21624_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 40 - 166
Target Start/End: Original strand, 48277769 - 48277895
Alignment:
| Q |
40 |
gtaattccttatcgtgttagatggcaattcaagttgtcttcttgcaataaaggtataaataaatatctttgatttataatccatcaatcatccttcacct |
139 |
Q |
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| T |
48277769 |
gtaattccttatcgtgttagagggcaattcaagttgtcttcttgcaataaaggtataaataaatatctttgatttataatccatcaatcatccttcacct |
48277868 |
T |
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| Q |
140 |
tcaatcaaatttccaaagaaaagaaaa |
166 |
Q |
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| T |
48277869 |
tcaatcaaatttccaaagaaaagaaaa |
48277895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 158 - 247
Target Start/End: Original strand, 48278230 - 48278319
Alignment:
| Q |
158 |
aaaagaaaactacaactaattnnnnnnnttgagattttcttttcaaattatatagatagaacaatgtaaaaccacgttaaaaacacctcc |
247 |
Q |
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| T |
48278230 |
aaaagaaaactacaactaattaaaaaaattgagattttcttttcaaattatatagatagaacaatgtaaaaccacattaaaaacacctcc |
48278319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 48277704 - 48277742
Alignment:
| Q |
1 |
ggtattgacgacgcgttcaaagtcgtttattcgttacct |
39 |
Q |
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| T |
48277704 |
ggtattgacgacgcgtacaaagtcgtttattcgttacct |
48277742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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