View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21624_low_21 (Length: 250)
Name: NF21624_low_21
Description: NF21624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21624_low_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 46449241 - 46449001
Alignment:
| Q |
10 |
gacatcatcaaacaattcataggtctctggagctggttgaagaagagatatgattgtggttgcatcaagtgcatgtgttgaatgcttgagatatctaata |
109 |
Q |
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| T |
46449241 |
gacatcatcaaacaattcataggtctctggagctggttgaagaagagatatgattgtggttgcatcaagtgcatgtgttgaatgcttgagatatctaata |
46449142 |
T |
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| Q |
110 |
atctgatatgtagttgaactatctaaaccagttgatatctcatccatgaacagcactcttgctggtccaattagtaattcgcctgtaaatcagacatcaa |
209 |
Q |
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| T |
46449141 |
atctgatatgtagttgaactatctaaaccagttgatatctcatccatgaacagcactcttgctggtccaattagtaattcgcctgtaaatcagacatcaa |
46449042 |
T |
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| Q |
210 |
ctgattagcatattgcaaatgtatctaaggcgctagtacaa |
250 |
Q |
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| T |
46449041 |
ctgattagcatattgcaaatgtatctaaggcgctagtacaa |
46449001 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 42135760 - 42135815
Alignment:
| Q |
122 |
gttgaactatctaaaccagttgatatctcatccatgaacagcactcttgctggtcc |
177 |
Q |
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| T |
42135760 |
gttgaactatctaatcctgttgatatttcatccatgaacagtacttttgctggtcc |
42135815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 43460402 - 43460453
Alignment:
| Q |
110 |
atctgatatgtagttgaactatctaaaccagttgatatctcatccatgaaca |
161 |
Q |
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| T |
43460402 |
atctgatatgttgtggaactatcaagaccagttgatatttcatccatgaaca |
43460453 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 49770278 - 49770216
Alignment:
| Q |
117 |
atgtagttgaactatctaaaccagttgatatctcatccatgaacagcactcttgctggtccaa |
179 |
Q |
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| T |
49770278 |
atgttgttgaactgtccaaaccagtcgatatttcgtccatgaaaagcgctcttgctggtccaa |
49770216 |
T |
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