View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21624_low_23 (Length: 242)
Name: NF21624_low_23
Description: NF21624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21624_low_23 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 7288775 - 7288999
Alignment:
| Q |
18 |
cttgctaattacaccccaccttcacattgcttatattcaaaattctccaaaattgttcttgaatggaaagcaacatgtgaaggaagacaatttgatcgaa |
117 |
Q |
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| T |
7288775 |
cttgctaattacaccccaccttcacattgcttatattcaaaattctccaaaattgttcttgaatggaaagcaacatgtgaaggaagacaatttgatcgaa |
7288874 |
T |
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| Q |
118 |
tttttggtgtttggcttgatggtgttgagttactcagaagctgtactgcagaaccaagacaaaatgggattgtttggagtgttgaaaaagacattacaag |
217 |
Q |
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| T |
7288875 |
tttttggtgtttggcttgatggtgttgagttactcagaagctgtactgcagaaccaagacaaaatgggattgtttggagtgttgaaaaagacattacaag |
7288974 |
T |
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| Q |
218 |
gtatcaatctttgttgttgaatcct |
242 |
Q |
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| T |
7288975 |
gtatcaatctttgttgttgaatcct |
7288999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 7292533 - 7292755
Alignment:
| Q |
18 |
cttgctaattacaccccaccttcacattgcttatattcaaaattctccaaaattgttcttgaatggaaagcaacatgtgaaggaagacaatttgatcgaa |
117 |
Q |
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|||||||| |||||||| || || ||||||| || | ||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||| |
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| T |
7292533 |
cttgctaactacacccctccctctcattgctcatttaaaaaattctccaaaattgttcttgaatggaaagcaacatgcgagggaagacaatatgatcgaa |
7292632 |
T |
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| Q |
118 |
tttttggtgtttggcttgatggtgttgagttactcagaagctgtactgcagaaccaagacaaaatgggattgtttggagtgttgaaaaagacattacaag |
217 |
Q |
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|||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| |
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| T |
7292633 |
ttttcggtgtttggcttggtggagttgagttactcagaagctgtactgcagaaccaatagcaaatgggattgtttggagtgttgaaaaagacatcacaag |
7292732 |
T |
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| Q |
218 |
gtatcaatctttgttgttgaatc |
240 |
Q |
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| T |
7292733 |
gtataaatctttgttgttgaatc |
7292755 |
T |
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Back To:
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