View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21624_low_28 (Length: 235)
Name: NF21624_low_28
Description: NF21624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21624_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 11 - 215
Target Start/End: Complemental strand, 6283883 - 6283679
Alignment:
| Q |
11 |
cgaagaaaatcaacttgatatagtcaaaaacatgtactacatgtgaaatcccttgaatnnnnnnnnnnnnntgcagtacatgtgaaagaaagttaacgca |
110 |
Q |
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| T |
6283883 |
cgaaaaaaatcaacttgatatagtcaaaaacatgtactacatgtgaaatcccttgaataaaaaatgaaaaatgcagtacatgtgaaagaaagttaacgca |
6283784 |
T |
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| Q |
111 |
tttctgatagtacattctattgacgttatgtttgactacttgtggcattttaagtaaaaggcatcatgaaaatatggactgggatgctgtccacagtact |
210 |
Q |
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| T |
6283783 |
tttctgaaagtacattctattgacgttatgtttgactacttgtggcattttaagtaaaaggcatcatgaaaatatggactgggatgctgaccacagtact |
6283684 |
T |
|
| Q |
211 |
gagta |
215 |
Q |
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||||| |
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| T |
6283683 |
gagta |
6283679 |
T |
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