View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21624_low_29 (Length: 235)
Name: NF21624_low_29
Description: NF21624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21624_low_29 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 36 - 235
Target Start/End: Original strand, 10152741 - 10152940
Alignment:
| Q |
36 |
aatcctaaacctaaataaattaaatgataaactgaagaaacctttgatgaagtgtggcattcaattgagagcagaattcatgcacagcttgtgaagaacc |
135 |
Q |
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| T |
10152741 |
aatcctaaacctaaatcaattaaatgataaactgaagaaacctttgatgaggtgtggcattcaattgagagcagaattcatgcacagcttgtgaagaacc |
10152840 |
T |
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| Q |
136 |
taaatcatagaggcctaaagcttcatagagaggattaacagcacttggtgccatgtaaccactaccagcaatgacatctttgttgtttttcttgatatcc |
235 |
Q |
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| T |
10152841 |
taaatcatagaggcctaaagcttcatagagaggattgacagcacttggtgccatgtaaccactaccagcaatgacatctttgttgtttttcttgatatcc |
10152940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 87 - 234
Target Start/End: Original strand, 10141171 - 10141318
Alignment:
| Q |
87 |
gtgtggcattcaattgagagcagaattcatgcacagcttgtgaagaacctaaatcatagaggcctaaagcttcatagagaggattaacagcacttggtgc |
186 |
Q |
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| T |
10141171 |
gtgtagcattcagttgagagcagaaatcatgcatggcttgtgaagaacccatatcatagaggccgaaagattgtaagagagggttaaaagcacttggtgc |
10141270 |
T |
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| Q |
187 |
catgtaaccactaccagcaatgacatctttgttgtttttcttgatatc |
234 |
Q |
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| T |
10141271 |
aaggtaaccacttccaggaatggcatctttgttgtttttctttatatc |
10141318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 75 - 235
Target Start/End: Original strand, 10089523 - 10089683
Alignment:
| Q |
75 |
acctttgatgaagtgtggcattcaattgagagcagaattcatgcacagcttgtgaagaacctaaatcatagaggcctaaagcttcatagagaggattaac |
174 |
Q |
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| T |
10089523 |
acctctgatgaggtgtagcattcaattgagagcagaaatcttgtatagcttgcgaagaacccatatcatagaggccgacagattctatgagagggttaaa |
10089622 |
T |
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| Q |
175 |
agcacttggtgccatgtaaccactaccagcaatgacatctttgttgtttttcttgatatcc |
235 |
Q |
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| T |
10089623 |
aacacttggtccaaagtaaccacttccaggaatgacatctttattgtttttcttgatatcc |
10089683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 87 - 235
Target Start/End: Original strand, 10146183 - 10146331
Alignment:
| Q |
87 |
gtgtggcattcaattgagagcagaattcatgcacagcttgtgaagaacctaaatcatagaggcctaaagcttcatagagaggattaacagcacttggtgc |
186 |
Q |
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| T |
10146183 |
gtgtgacattcagttgagagcagaaatcatgcatagcttatgaagcatccatgtcatagaggccgaaagattctaatagtgggtttaaagcacttggtgc |
10146282 |
T |
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| Q |
187 |
catgtaaccactaccagcaatgacatctttgttgtttttcttgatatcc |
235 |
Q |
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| T |
10146283 |
aaagtaaccccttccagaaatgacatctttgttgtttttcttgatatcc |
10146331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 11301219 - 11301066
Alignment:
| Q |
75 |
acctttgatgaagtgtggcattcaattgagagcagaattcatgcacagcttgtgaagaacctaaatcatagaggcctaaagcttcatagagaggattaac |
174 |
Q |
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| T |
11301219 |
acctctgatgaggtgtagcattcaattgagagcagaaatattgtatagcttgtgaagaacccatatcatagaggccaagagattctatgacagggttaaa |
11301120 |
T |
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| Q |
175 |
agcacttggtgccatgtaaccactaccagcaatgacatctttgttgtttttctt |
228 |
Q |
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| T |
11301119 |
aacagttggtccaaagtaaccacttccaggaatgacatctttattgtttttctt |
11301066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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