View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21624_low_30 (Length: 229)
Name: NF21624_low_30
Description: NF21624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21624_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 5328590 - 5328803
Alignment:
| Q |
1 |
aaaacattgtatactcatatagtaaagagaatgaggttagtgtaactaggaattgactactagagtgattgaaatctcatgtttatttttcttgttcttc |
100 |
Q |
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| T |
5328590 |
aaaacattgtatacacatatagtaaagagaatgaggttggtgtaactaggaattgactacaagagtgattgaaatcacatgtttatttttcttgttcttc |
5328689 |
T |
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| Q |
101 |
taataaaaacaacaaatcctcaaaagaattatcaagtgttatgtttcccccaatttaaattttctgctgtaagagattttacacattcgcactgttagta |
200 |
Q |
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| T |
5328690 |
taataaaaacaacaaatcctcaaaataattatcaagtgttatgtttcctccaatttaaattttctgctgtaagagattttacacattcgcactgttagta |
5328789 |
T |
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| Q |
201 |
actcagattggttg |
214 |
Q |
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|||||||||||||| |
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| T |
5328790 |
actcagattggttg |
5328803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 5316946 - 5316866
Alignment:
| Q |
129 |
ttatcaagtgttatgtttcccccaatttaaattttctgctgtaagagattttacacattcgcactgttagtaactcagatt |
209 |
Q |
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||||||| |||||||||||| | |||| |||||||||| || ||||||| |||| |||| ||||||||| |||||||| |
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| T |
5316946 |
ttatcaactgttatgtttcctcgaattctaattttctgcggtgagagattctacaaattcaagctgttagtagctcagatt |
5316866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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