View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21624_low_31 (Length: 227)
Name: NF21624_low_31
Description: NF21624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21624_low_31 |
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| [»] scaffold0150 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 52133764 - 52133555
Alignment:
| Q |
7 |
gttgaaactctgtctgataattatatggaacaaaaccaaactaaagacgaactcttgaacccaagagctcctgtctcttctgctggaattgctggctttc |
106 |
Q |
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| T |
52133764 |
gttgaaactctgtctgataattatatggaacaaaaccaaactaaggaggaactcttgaacccaatagctcctgtctcttctgctggaattgctggctttc |
52133665 |
T |
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| Q |
107 |
ttcccacaaatgatgctgatgcaaataacatcgtaggagctgaaggaactttgtactatagatgctcaaaccaatgtgcttatgtcacatgtgatatttc |
206 |
Q |
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| T |
52133664 |
ttcccgcaaatgatgcagatgccaataacatcgtaggagatgaagtaactttgtactatagatgcttaaacaggtgtgcttatgtcacatgtgatagctc |
52133565 |
T |
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| Q |
207 |
aactcgttgt |
216 |
Q |
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|||||||||| |
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| T |
52133564 |
aactcgttgt |
52133555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 8974 - 8865
Alignment:
| Q |
7 |
gttgaaactctgtctgataattatatggaacaaaaccaaactaaagacgaactcttgaacccaagagctcctgtctcttctgctggaattgctggctttc |
106 |
Q |
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||||||||| |||| |||||||||||||||||| | ||||||||||| | | ||||||| ||||||||| ||| ||| ||| |||||| ||| ||| |
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| T |
8974 |
gttgaaactttgtccgataattatatggaacaagaacaaactaaagaggttttgctgaaccccagagctcctatctattcaactgaaattgcaggccttc |
8875 |
T |
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| Q |
107 |
ttcccacaaa |
116 |
Q |
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| T |
8874 |
ttcccgcaaa |
8865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 17020296 - 17020342
Alignment:
| Q |
7 |
gttgaaactctgtctgataattatatggaacaaaaccaaactaaaga |
53 |
Q |
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| T |
17020296 |
gttgaaactttgtccgatcattatatggaacaagaccaaactaaaga |
17020342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 17550733 - 17550779
Alignment:
| Q |
7 |
gttgaaactctgtctgataattatatggaacaaaaccaaactaaaga |
53 |
Q |
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| T |
17550733 |
gttgaaactttgtccgatcattatatggaacaagaccaaactaaaga |
17550779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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