View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21624_low_33 (Length: 214)
Name: NF21624_low_33
Description: NF21624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21624_low_33 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 178; Significance: 3e-96; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 13484100 - 13483906
Alignment:
| Q |
18 |
acaatagatgtggtttcatcctcaaagttgaagacacccatgatgataatgaattataaatttctaatt----tatgaaataacaaactattaataagtt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13484100 |
acaatagatgtggtttcatcctcaaagttgaagacacccatgatgataatgaattataaatttctaattaatgtatgaaataacaaactattaataagtt |
13484001 |
T |
|
| Q |
114 |
aattgtttgcctgtgtgatttattagtggagttcactcttgtatttataggaactgaagatgtattgtttagactttggatgatgatgatgatgt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13484000 |
aattgtttgcctgtgtgatttattagtggagttcactcttgtatttataggaactgaagatgtattgtttagactttggatgatgatgatgatgt |
13483906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 13489825 - 13489649
Alignment:
| Q |
18 |
acaatagatgtggtttcatcctcaaagttgaagacacccatgatgataatgaattataaatttctaatt----tatgaaataacaaactattaataagtt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
13489825 |
acaatagatgtggtttcatcctcaaagttgaagacacccatgatgataatgaattataaatttctaattaatgtatgaaataacaaactattaagaagtt |
13489726 |
T |
|
| Q |
114 |
aattgtttgcctgtgtgatttattagtggagttcactcttgtatttataggaactgaagatgtattgtttagacttt |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
13489725 |
aattgtttgcctgtgtgatttattagtggagttcactcttgtatttataggaaaagaagatgtatagtttagacttt |
13489649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 13508393 - 13508345
Alignment:
| Q |
139 |
gtggagttcactcttgtatttataggaactgaagatgtattgtttagac |
187 |
Q |
| |
|
|||||||| | ||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
13508393 |
gtggagttgagtctagtatttatagtaactgaagatgtattgtttagac |
13508345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 13508525 - 13508480
Alignment:
| Q |
18 |
acaatagatgtggtttcatcctcaaagttgaagacacccatgatga |
63 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| |||||||| |||| |
|
|
| T |
13508525 |
acaatagaggtggtttcatcctcaaaattgaaaacacccattatga |
13508480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 13514654 - 13514618
Alignment:
| Q |
154 |
gtatttataggaactgaagatgtattgtttagacttt |
190 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
13514654 |
gtatttataggaactgaagttgtattatttagacttt |
13514618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 13514773 - 13514733
Alignment:
| Q |
22 |
tagatgtggtttcatcctcaaagttgaagacacccatgatg |
62 |
Q |
| |
|
|||| ||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
13514773 |
tagaggtggtttcatcctcaaaattgaacacacccatgatg |
13514733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University