View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21624_low_8 (Length: 420)

Name: NF21624_low_8
Description: NF21624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21624_low_8
NF21624_low_8
[»] chr8 (1 HSPs)
chr8 (151-396)||(12640472-12640717)
[»] chr4 (3 HSPs)
chr4 (182-304)||(48963324-48963446)
chr4 (196-402)||(48959084-48959290)
chr4 (187-394)||(48966280-48966487)
[»] chr2 (3 HSPs)
chr2 (186-402)||(13441143-13441359)
chr2 (182-402)||(13449306-13449526)
chr2 (154-400)||(13462329-13462572)
[»] chr6 (3 HSPs)
chr6 (192-304)||(12589219-12589331)
chr6 (182-310)||(12482477-12482605)
chr6 (358-402)||(12589370-12589414)
[»] chr5 (2 HSPs)
chr5 (226-304)||(12541714-12541792)
chr5 (182-313)||(28386360-28386491)
[»] chr7 (1 HSPs)
chr7 (252-376)||(3416622-3416746)


Alignment Details
Target: chr8 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 151 - 396
Target Start/End: Original strand, 12640472 - 12640717
Alignment:
Q  151 aaaattgatcagcaatggaaggtagtgtcggagttgaacggccattgaaactttacttgcttccatttctatcacctggtcatatgattcctttgggtga 250  Q
    |||| |||||||||||||||| | |||| ||||||||||||||||||||||||  | | |||||||||||| ||||||||||||||||||||||||||||    
T  12640472 aaaactgatcagcaatggaagatggtgttggagttgaacggccattgaaacttctcatacttccatttctagcacctggtcatatgattcctttgggtga 12640571  T
Q  251 catagcaactctgtttgcatcccatggccaacaagtcacgatcatcaccactcctgccaatgctcatttctttagcaaatctctctcctccgtcgatccg 350  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||  |||| || |||||||||| |||||||||||||| ||||||||||    
T  12640572 catagcagctttgtttgcatcccatggccaacaagtcacgatcatcaccactccctccaacgcccatttctttaccaaatctctctccttcgtcgatccg 12640671  T
Q  351 tttttcctccgccttcacaccgtcgatttcccctcccagcaagtcg 396  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||    
T  12640672 tttttcctccgccttcacaccgtcgacttcccctcccaacaagtcg 12640717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 8e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 182 - 304
Target Start/End: Complemental strand, 48963446 - 48963324
Alignment:
Q  182 agttgaacggccattgaaactttacttgcttccatttctatcacctggtcatatgattcctttgggtgacatagcaactctgtttgcatcccatggccaa 281  Q
    ||||||||| |||||||||||| ||||  |||||| |||  ||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||    
T  48963446 agttgaacgaccattgaaacttcacttcattccatatcttgcacctggtcatatgattcctttgggtgacatagcagctctgtttgcgtcccgtggccaa 48963347  T
Q  282 caagtcacgatcatcaccactcc 304  Q
    |||||||| ||||||||||||||    
T  48963346 caagtcacaatcatcaccactcc 48963324  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 196 - 402
Target Start/End: Complemental strand, 48959290 - 48959084
Alignment:
Q  196 tgaaactttacttgcttccatttctatcacctggtcatatgattcctttgggtgacatagcaactctgtttgcatcccatggccaacaagtcacgatcat 295  Q
    |||||||| ||||  |||||| || | ||||||| |||||||| ||  || |||||||||||||||||||||||||||||||||||||||| || |||||    
T  48959290 tgaaacttcacttcattccatatccagcacctgggcatatgatccccatgtgtgacatagcaactctgtttgcatcccatggccaacaagtgacaatcat 48959191  T
Q  296 caccactcctgccaatgctcatttctttagcaaatctctctcctccgtcgatccgtttttcctccgccttcacaccgtcgatttcccctcccagcaagtc 395  Q
    |||||||||  ||||  | || ||||||| ||||||||||||    || ||||| || |||||||||||||||   ||| | || |||||||| |||||     
T  48959190 caccactccctccaactcccacttctttaccaaatctctctcaagtgttgatcccttcttcctccgccttcaccttgtcaactttccctcccaacaagtt 48959091  T
Q  396 ggcctcc 402  Q
    |||||||    
T  48959090 ggcctcc 48959084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 187 - 394
Target Start/End: Complemental strand, 48966487 - 48966280
Alignment:
Q  187 aacggccattgaaactttacttgcttccatttctatcacctggtcatatgattcctttgggtgacatagcaactctgtttgcatcccatggccaacaagt 286  Q
    |||| ||| |||||||| ||||  |||||| |||| |||| || |||||||| ||| || |||||||||||||| | |||||||| ||||||||||||||    
T  48966487 aacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactatctttgcatctcatggccaacaagt 48966388  T
Q  287 cacgatcatcaccactcctgccaatgctcatttctttagcaaatctctctcctccgtcgatccgtttttcctccgccttcacaccgtcgatttcccctcc 386  Q
    ||| |||||||| |||||  | || ||  | ||| ||  |||||||||  ||||| | |||||  | ||||||||| |||||||||| |||||||||| |    
T  48966387 caccatcatcacaactccctctaacgccaacttcctttccaaatctcttccctccatagatcctctcttcctccgcattcacaccgttgatttcccctac 48966288  T
Q  387 cagcaagt 394  Q
    || |||||    
T  48966287 caacaagt 48966280  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 186 - 402
Target Start/End: Complemental strand, 13441359 - 13441143
Alignment:
Q  186 gaacggccattgaaactttacttgcttccatttctatcacctggtcatatgattcctttgggtgacatagcaactctgtttgcatcccatggccaacaag 285  Q
    ||||| ||| ||||| || ||||  |||||| |||| || |||| |||||||| ||| |  |||||||||||||| |||||||||||| |||||||||||    
T  13441359 gaacgaccactgaaaattcacttcattccatatctagcatctggacatatgatccctctttgtgacatagcaactatgtttgcatcccgtggccaacaag 13441260  T
Q  286 tcacgatcatcaccactcctgccaatgctcatttctttagcaaatctctctcctccgtcgatccgtttttcctccgccttcacaccgtcgatttcccctc 385  Q
    |||| ||||||||||||||  |||| ||||| | | | | |||||||||||| ||||  | | | || ||||||||| | ||||||||||| || |||||    
T  13441259 tcacaatcatcaccactccctccaacgctcaatccctaaccaaatctctctcatccgcggcttccttcttcctccgcttccacaccgtcgactttccctc 13441160  T
Q  386 ccagcaagtcggcctcc 402  Q
    ||| ||||||| |||||    
T  13441159 ccaacaagtcgacctcc 13441143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 182 - 402
Target Start/End: Complemental strand, 13449526 - 13449306
Alignment:
Q  182 agttgaacggccattgaaactttacttgcttccatttctatcacctggtcatatgattcctttgggtgacatagcaactctgtttgcatcccatggccaa 281  Q
    ||||||||  ||||||||| |||||||  ||||||||||  || |||| |||||||| ||| |   ||||||||||||| |||||||||||| ||||||     
T  13449526 agttgaacaaccattgaaagtttacttcattccatttcttgcatctggacatatgatccctctttttgacatagcaactatgtttgcatcccgtggccag 13449427  T
Q  282 caagtcacgatcatcaccactcctgccaatgctcatttctttagcaaatctctctcctccgtcgatccgtttttcctccgccttcacaccgtcgatttcc 381  Q
    ||||| ||  ||||||||||||| ||||| ||  | | | ||| |||||||||||| |||| || ||| |  ||||| || ||||||||||| || ||||    
T  13449426 caagtaacagtcatcaccactcccgccaacgcaaaatcccttaccaaatctctctcatccgacgctccttcattccttcgtcttcacaccgttgacttcc 13449327  T
Q  382 cctcccagcaagtcggcctcc 402  Q
    ||||||| |||||||||||||    
T  13449326 cctcccaacaagtcggcctcc 13449306  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 400
Target Start/End: Complemental strand, 13462572 - 13462329
Alignment:
Q  154 attgatcagcaatggaaggtagtgtcggagttgaacggccattgaaactttacttgcttccatttctatcacctggtcatatgattcctttgggtgacat 253  Q
    |||| |||||||||||||||   || | ||||||||  ||| |||||||  ||||  |||||| |||| || |||| |||||||| ||| |   ||||||    
T  13462572 attgttcagcaatggaaggt---gtagaagttgaacaaccactgaaactgcacttcattccatatctagcatctggacatatgatccctctttttgacat 13462476  T
Q  254 agcaactctgtttgcatcccatggccaacaagtcacgatcatcaccactcctgccaatgctcatttctttagcaaatctctctcctccgtcgatccgttt 353  Q
    ||||| | |||||||||||| ||||||||| |||||  |||||||||||||  |||| |  || | | ||| |||||||||||| |||| || ||| |      
T  13462475 agcaattatgtttgcatcccgtggccaacacgtcacagtcatcaccactccctccaacgtccaatcccttaccaaatctctctcatccgccgctccctcc 13462376  T
Q  354 ttcctccgccttcacaccgtcgatttcccctcccagcaagtcggcct 400  Q
     |||| ||| |||||||| |||| ||||||||||| ||||| |||||    
T  13462375 ctccttcgctttcacaccatcgaattcccctcccaacaagttggcct 13462329  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 192 - 304
Target Start/End: Original strand, 12589219 - 12589331
Alignment:
Q  192 ccattgaaactttacttgcttccatttctatcacctggtcatatgattcctttgggtgacatagcaactctgtttgcatcccatggccaacaagtcacga 291  Q
    ||||| |||||| ||||  |||||| |||||||||||| |||||||| ||| |  ||||||| ||||| ||||||||||||| ||||||||||||||| |    
T  12589219 ccattaaaacttcacttcattccatatctatcacctgggcatatgatccctctatgtgacattgcaaccctgtttgcatcccgtggccaacaagtcacaa 12589318  T
Q  292 tcatcaccactcc 304  Q
    ||| |||||||||    
T  12589319 tcaccaccactcc 12589331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 182 - 310
Target Start/End: Original strand, 12482477 - 12482605
Alignment:
Q  182 agttgaacggccattgaaactttacttgcttccatttctatcacctggtcatatgattcctttgggtgacatagcaactctgtttgcatcccatggccaa 281  Q
    ||||||||| |||||||||||| ||||  ||||||||| | ||||||| |||||||| ||| || |  | || ||||||||||||||||| | ||||||     
T  12482477 agttgaacgaccattgaaacttcacttcattccatttccagcacctgggcatatgatccctatgtgcaagattgcaactctgtttgcatcacgtggccat 12482576  T
Q  282 caagtcacgatcatcaccactcctgccaa 310  Q
    || ||||| ||||||||||||||| ||||    
T  12482577 catgtcacaatcatcaccactccttccaa 12482605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 402
Target Start/End: Original strand, 12589370 - 12589414
Alignment:
Q  358 tccgccttcacaccgtcgatttcccctcccagcaagtcggcctcc 402  Q
    |||||||||||| ||| |||||||||||||  |||||||||||||    
T  12589370 tccgccttcacatcgtagatttcccctccctacaagtcggcctcc 12589414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 304
Target Start/End: Complemental strand, 12541792 - 12541714
Alignment:
Q  226 ctggtcatatgattcctttgggtgacatagcaactctgtttgcatcccatggccaacaagtcacgatcatcaccactcc 304  Q
    |||| |||||||| ||| |  |||| ||||||||| |||||||||| ||||||||||||||||| ||||||||||||||    
T  12541792 ctggacatatgatccctctttgtgatatagcaactttgtttgcatcacatggccaacaagtcacaatcatcaccactcc 12541714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 313
Target Start/End: Complemental strand, 28386491 - 28386360
Alignment:
Q  182 agttgaacggccattgaaactttacttgcttccatttctatcacctggtcatatgattcctttgggtgacatagcaactctgtttgcatcccatggccaa 281  Q
    ||||||| | |||||||||||| ||||  |||| | || | || |||| |||||||| ||  |  |||| ||||||||| |||||||||| | |||||||    
T  28386491 agttgaaagaccattgaaacttcacttcattccgtatccagcatctggacatatgatgccactttgtgatatagcaactttgtttgcatcacgtggccaa 28386392  T
Q  282 caagtcacgatcatcaccactcctgccaatgc 313  Q
    || ||||| ||||||||||||||  |||||||    
T  28386391 catgtcacaatcatcaccactccctccaatgc 28386360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 252 - 376
Target Start/End: Original strand, 3416622 - 3416746
Alignment:
Q  252 atagcaactctgtttgcatcccatggccaacaagtcacgatcatcaccactcctgccaatgctcatttctttagcaaatctctctcctccgtcgatccgt 351  Q
    |||||| || |||||||||||||||||||||| ||||| ||||||||||||||  |||||||  | ||  |||  |||||||| || |  | || ||| |    
T  3416622 atagcagctatgtttgcatcccatggccaacatgtcacaatcatcaccactccctccaatgccaaatttcttacaaaatctctttcttatgccgctccct 3416721  T
Q  352 ttttcctccgccttcacaccgtcga 376  Q
    | |||||||||||||||||||||||    
T  3416722 tcttcctccgccttcacaccgtcga 3416746  T

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