View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21625_high_3 (Length: 413)
Name: NF21625_high_3
Description: NF21625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21625_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 52477902 - 52477513
Alignment:
| Q |
18 |
gtttcaaagaagcagatgaatcaaaatgctttcccaattagtaaaagaacatccttactttgttggtttcttattggtgtttttatcatctttaaaagtg |
117 |
Q |
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| T |
52477902 |
gtttcaaagaagcagatgaatcaaaatgctttcccaattagtaaaagaacatccttactttgttggtttcttattggtgtttttatcatctttaaaagtg |
52477803 |
T |
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| Q |
118 |
tgtgcactttggtgcaaaaacaacaagtgcagttgtagtgttggcattcctccgggaaatcgaggattacccttcataggagagacactgcacttcatgg |
217 |
Q |
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| T |
52477802 |
tgtgcactttggtgcaaaaacaacaagtgcagtcgtagtgttggcattcctccgggaaatcgaggattacccttcataggagagacactgcacttcatgg |
52477703 |
T |
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| Q |
218 |
ctgccatcaacagtaccaaaggtgtctatgaatttgtccgacttcgccgcctccggtaaccaaatccgttatttcacttgatttatttttgactctgact |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52477702 |
ctgccatcaacagtaccaaaggtgtctatgaatttgtccgacttcgccgcctccggtaaccaaatccgttatttcacttgatttatttttga--ctgact |
52477605 |
T |
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| Q |
318 |
ctcatgctggttttgtccttggaacttatgttccttatcacttctagtcacaattgcatcttcaaaacaaaacgcaagacacttctctgatc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52477604 |
ctcatgctggttttgtccttggaacttatgttccttatcacttctagtcacaattgcatcttcaaaacaaaacgcaagacacttctctgatc |
52477513 |
T |
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