View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21625_low_1 (Length: 667)

Name: NF21625_low_1
Description: NF21625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21625_low_1
NF21625_low_1
[»] chr1 (2 HSPs)
chr1 (109-658)||(44279489-44280038)
chr1 (18-57)||(44280091-44280130)


Alignment Details
Target: chr1 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 109 - 658
Target Start/End: Complemental strand, 44280038 - 44279489
Alignment:
Q  109 tgccttgcatggatcacgctgccctagccgtcctcgccgccatcgccagttttttcgtcgtcacaatcatactcgccgccatcatcctcatctgccaaca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44280038 tgccttgcatggatcacgctgccctagccgtcctcgccgccatcgccagttttttcgtcgtcacagtcatactcgccgccatcatcctcatctgccaaca 44279939  T
Q  209 ccgcaaaaccacccaaacccgccgtaacaaccagatccgaacccgaccccttcgtaacccaaatcattacccaaccagctcctcctccctccccgtcgat 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44279938 ccgcaaaaccacccaaacccgccgtaacaaccagatccgaacccgaccacttcgtaacccaaatcattacccaaccagctcctcctccctccccgtcgat 44279839  T
Q  309 gccagctggtcatgggatccaaatctcaaaatctccatggaagaactctcacgcgctacaaaaaatttctccaataccctcatcgttggcgatggtagct 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  44279838 gccagctggtcatgggatccaaatctcaaaatctccatggaagaactctcacgcgctacaaaaaatttctccaacaccctcatcgtcggcgatggtagct 44279739  T
Q  409 tcggctatgtttacaaagctagtctctccaccggcgctaccgtcgccgtcaaaaaactctcccctgacgcttttcaaggcttccgtgaattcgcagcgga 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44279738 tcggctatgtttacaaagctagtctctccaccggcgctaccgtcgccgtcaaaaaactctcccctgacgcttttcaaggcttccgtgaattcgcagcgga 44279639  T
Q  509 gatggaaacgctaagcaaactccgccaccacaacatcgtgaaaatcctcggttattgggcttctggagctgaacggttactcgtttacgagttcattgaa 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44279638 gatggaaacgctaagcaaactccgccaccacaacatcgtgaaaatcctcggttattgggcttctggagctgaacggttactcgtttacgagttcattgaa 44279539  T
Q  609 aaaggaaacctcgatcaatggcttcatgaatcatctccaacctcttcttc 658  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44279538 aaaggaaacctcgatcaatggcttcatgaatcatctccaacctcttcttc 44279489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 44280130 - 44280091
Alignment:
Q  18 tttattccttccactcaacttacatacaccattcattcca 57  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  44280130 tttattccttccactcaacttacatacaccattcattcca 44280091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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