View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21626_high_1 (Length: 469)
Name: NF21626_high_1
Description: NF21626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21626_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 461
Target Start/End: Original strand, 32401647 - 32402099
Alignment:
| Q |
18 |
taaggtaaatcttatgtgccttgatttttaatggtctata--------cacctgctatttatgcgtaagagttcgcaattatgttatgcatgctggcctt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32401647 |
taaggtaaatcttatgtgccttgatttttaatggtctatattttcatacacctgctatttatgcgtaagagttcgcaattatgttatgcatgctggcctt |
32401746 |
T |
|
| Q |
110 |
taccgtgctttttgtttagttttcctctttactatacacctaccaaattttttgttgggctatttttatactaaaatccctatttttcattttggaagat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32401747 |
taccgtgctttttgtttagttttcctctttactatacacctaccaaattttttgttgggctatttttatactaaaatccctatttttcattttggaagat |
32401846 |
T |
|
| Q |
210 |
aaaagaaatcagatatccattccagacttcattcatccattttctccagaaaaatgggaaaaat-aannnnnnnnncatgctactattgattatatttat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
32401847 |
aaaagaaatcagatatccattccagacttcattcatccattttctccagaaaaatgggaaaaatcattttttttttcatgctactattgattatatttat |
32401946 |
T |
|
| Q |
309 |
gatacaagccatctctcagtttagtacagaaaatgaattatatttttccagttttagcttaaggttgtattggtttatcacttttataatgacaggattg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32401947 |
gatacaagccatctctcagtttagtacagaaaatgaattatatttttccagtattagcttcaggttgtattggtttatcacttttataatgacaggattg |
32402046 |
T |
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| Q |
409 |
ccaaggatcctagatttgagagattactctgtactcataggggtacctatgct |
461 |
Q |
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| T |
32402047 |
ccaaggatcctcgatttgagagattactctgtactcataggggtacctatgct |
32402099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 461
Target Start/End: Complemental strand, 48202271 - 48201826
Alignment:
| Q |
18 |
taaggtaaatcttatgtgccttgatttttaatggtctata--------cacctgctatttatgcgtaagagttcgcaattatgttatgcatgctggcctt |
109 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||| | |||||||| ||||||||||| ||||||||| ||||||||||||||| ||| |
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| T |
48202271 |
taaggtagatcttatgtgccttgatttttaatggtctatattttcatacgcctgctatgtatgcgtaagaattcgcaattgtgttatgcatgctgggctt |
48202172 |
T |
|
| Q |
110 |
taccgtgctttttgtttagttttcctctttactatacacctaccaaattttttgttgggctatttttatactaaaatccctatttttcattttggaagat |
209 |
Q |
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||| ||||||||||||||||||| |||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
48202171 |
tacgatgctttttgtttagttttcatctttactatacggctgccaaattttttgttgggatatttttatactaaaatccctatttttcattttggaagat |
48202072 |
T |
|
| Q |
210 |
aaaagaaatcagatatccattccagacttcattcatccattttctccagaaaaatgggaaaaataannnnnnnnncatgctactattgattatatttatg |
309 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||| | ||||||||||||||||||||||||| |
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| T |
48202071 |
aaaagaaatcagatatcca-----gacttcattcatccattttctcccgtaaaatgggaaaaatcatttctttt-catgctactattgattatatttatg |
48201978 |
T |
|
| Q |
310 |
atacaagccatctctcagtttagtacagaaaatgaattatatttttccagttttagcttaaggttgtattggtttatcacttttataatgacaggattgc |
409 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||| ||||||||| |
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| T |
48201977 |
atacaagccatctctcagtttattacagaaaatgaattatatttttccagttttagcttcaggttgtattgatttatcacttctataatggcaggattgc |
48201878 |
T |
|
| Q |
410 |
caaggatcctagatttgagagattactctgtactcataggggtacctatgct |
461 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48201877 |
aaaggatcctcgatttgagagattactctgtactcataggggtacctatgct |
48201826 |
T |
|
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