View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21626_high_2 (Length: 421)
Name: NF21626_high_2
Description: NF21626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21626_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 17 - 381
Target Start/End: Complemental strand, 14800383 - 14800015
Alignment:
| Q |
17 |
caaagggaaggtactaaaagtactcttttagtaggaaacagacaaatcatagaatcaagggacatacaaaacaaacatctaatggcatcatggatttgct |
116 |
Q |
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| T |
14800383 |
caaagggaaggtactaaaagtactcttttagtaggaaacagacaaatcatagaatcaagggacatacaaaacaaacatctaatggcatcatggatttgct |
14800284 |
T |
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| Q |
117 |
agcaagatgtgaaacaaagacaattatatatcatggctgacttaccagtagttttttatactacactagaagtaaattctgg----nnnnnnnnnctcat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| |
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| T |
14800283 |
agcaagatgtgaaacaaagacaattatatatcatggctgacttaccagtagttttttataccacactagaagtaaattgtggttttttttttcttctcat |
14800184 |
T |
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| Q |
213 |
aggttctctccactagatctagagataatcttatttgagatgtgtcaggcattaaatataagtatctctctcagctgagattcaatcgttggccgttcat |
312 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||| |||||||||||||||||| |||| |||||| |
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| T |
14800183 |
aggttctctccactagatctagagataatcttattcgagatgtgtcagacattaaatataggtatctctttcagctgagattcaatcggtggctgttcat |
14800084 |
T |
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| Q |
313 |
attgaaaaaatttagcctcttatgatagatccgacctcattgatatgaaaatgtgactttgtaaatatt |
381 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14800083 |
attgaaaaagtttagcctcttatgatagatccgacctcattgatatgaaaatgtaactttgtaaatatt |
14800015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 14804056 - 14803943
Alignment:
| Q |
17 |
caaagggaaggtactaaaagtactcttttagtaggaaacagacaaatcatagaatcaagggacatacaaaacaaacatctaatggcatcatggatttgct |
116 |
Q |
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|||| ||||||||| |||| ||||||| ||||||||||||| ||||||||||||||||||||| | | ||||||||||| |||||||||| |||||| |
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| T |
14804056 |
caaaaggaaggtaccaaaattactctt--agtaggaaacagataaatcatagaatcaagggacaaatataacaaacatcttatggcatcatagatttgtg |
14803959 |
T |
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| Q |
117 |
agcaagatgtgaaaca |
132 |
Q |
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||||||| |||||||| |
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| T |
14803958 |
agcaagacgtgaaaca |
14803943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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