View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21626_high_6 (Length: 216)
Name: NF21626_high_6
Description: NF21626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21626_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 107108 - 107315
Alignment:
| Q |
1 |
ttcataagttttgaccctatgtttgatttgattattatggctgcctgtaggtgatctgaagaagatcaaccacttggttaagcttgaaggtgctaaggag |
100 |
Q |
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| T |
107108 |
ttcatacgttttgaccctatgtttgatttgattattatggctgcctgtaggtgatccgaagaagatcaaccacttggttaagcttgaaggtgctaaggag |
107207 |
T |
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| Q |
101 |
agattacaactgtttaaggcaaatctacttgaacagggagcttttgattctgttgttcaaggctgtcatggtgtgtttcacactgcatctcccttctatg |
200 |
Q |
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| T |
107208 |
agattacaactgtttaaggcaaatctacttgaacagggagcttttgattctgctgttcaaggctgtcatggtgtgtttcacactgcatctcccttctatc |
107307 |
T |
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| Q |
201 |
atgatgtc |
208 |
Q |
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| T |
107308 |
atcatgtc |
107315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 44 - 208
Target Start/End: Original strand, 87787 - 87951
Alignment:
| Q |
44 |
cctgtaggtgatctgaagaagatcaaccacttggttaagcttgaaggtgctaaggagagattacaactgtttaaggcaaatctacttgaacagggagctt |
143 |
Q |
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| T |
87787 |
cctgtagatgatcccaagaaggttgaccacttggttaagcttgatggtgctaaggagagattgcaactgttcaaggcaaatctacttgaagaaggtgcct |
87886 |
T |
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| Q |
144 |
ttgattctgttgttcaaggctgtcatggtgtgtttcacactgcatctcccttctatgatgatgtc |
208 |
Q |
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| T |
87887 |
ttgattctgttgttcaaggctgtcatggtgtctttcacactgcatctcccttttatcatgatgtc |
87951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 29548967 - 29549082
Alignment:
| Q |
71 |
cacttggttaagcttgaaggtgctaaggagagattacaactgtttaaggcaaatctacttgaacagggagcttttgattctgttgttcaaggctgtcatg |
170 |
Q |
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| T |
29548967 |
cacttgcttaaacttgatggtgcaaaggaaaggttgcaactctttaaggcagatttacttgaagaaggttcctttgattctgttattcaaggatgccatg |
29549066 |
T |
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| Q |
171 |
gtgtgtttcacactgc |
186 |
Q |
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| T |
29549067 |
gtgtctttcatactgc |
29549082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 25933440 - 25933555
Alignment:
| Q |
71 |
cacttggttaagcttgaaggtgctaaggagagattacaactgtttaaggcaaatctacttgaacagggagcttttgattctgttgttcaaggctgtcatg |
170 |
Q |
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| T |
25933440 |
cacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcttttgactctgttgttgagggttgtgatg |
25933539 |
T |
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| Q |
171 |
gtgtgtttcacactgc |
186 |
Q |
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| T |
25933540 |
gtgtctttcatactgc |
25933555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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