View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21626_low_5 (Length: 250)
Name: NF21626_low_5
Description: NF21626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21626_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 11591138 - 11590912
Alignment:
| Q |
1 |
ggaagagaagatgtaacaacaactacagaacgtagcagaacagaagagcatcaaaattcacctgatcctnnnnnnncatctacaactaccactgttgctg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11591138 |
ggaagagaagatgtaacaacaactacagaacgtagcagaacagaagagcatcaaaattcacctgatcctaaaaaaacatctacaactaccactgttgctg |
11591039 |
T |
|
| Q |
101 |
cagaaggaaccgaatctcaaacacaaaggaaagagcatgatgatgctgttagagcaaagataatgaagcttaataataaactgaaaaaactgaattcata |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11591038 |
cagaaggaaccgaatctcaaacacaaaggaaagagcatgatgatgctgttagagcaaagataatgaagcttaataataaactgaaaaaactgaattcata |
11590939 |
T |
|
| Q |
201 |
ttcttcatttctgaacatcttcaatct |
227 |
Q |
| |
|
|||||| |||||||| ||| ||||||| |
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|
| T |
11590938 |
ttcttcttttctgaatatcctcaatct |
11590912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 11646529 - 11646755
Alignment:
| Q |
1 |
ggaagagaagatgtaacaacaactacagaacgtagcagaacagaagagcatcaaaattcacctgatcctnnnnnnncatctacaactaccactgttgctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11646529 |
ggaagagaagatgtaacaacaactacagaacgtagcagaacagaagagcatcaaaattcacctgatcctaaaaaaacatctacaactaccactgttgctg |
11646628 |
T |
|
| Q |
101 |
cagaaggaaccgaatctcaaacacaaaggaaagagcatgatgatgctgttagagcaaagataatgaagcttaataataaactgaaaaaactgaattcata |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
11646629 |
cagaaggaaccgaatctcaaacacaaaggaaagagcatgatgatgctgttagagcaaagataatgaagcttaataataaactgaaaaaactgaattcgta |
11646728 |
T |
|
| Q |
201 |
ttcttcatttctgaacatcttcaatct |
227 |
Q |
| |
|
|||||| |||||||| ||| ||||||| |
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|
| T |
11646729 |
ttcttcttttctgaatatcctcaatct |
11646755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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