View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21626_low_8 (Length: 208)
Name: NF21626_low_8
Description: NF21626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21626_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 90 - 188
Target Start/End: Complemental strand, 107005 - 106907
Alignment:
| Q |
90 |
agtgtttgtgttataaagatcaaaagagaagagaatgaattacttgggtcgcgagcggtggctttaacagtgtaaccacgatggagaaggtaacgaacg |
188 |
Q |
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| T |
107005 |
agtgtttgtgttataaagatcaaaagagaagagaatgaattacttgggtcgcgaacggtggctttaacagtgtaaccacgatggagaaggtaacgaacg |
106907 |
T |
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Target: chr3; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 107128 - 107051
Alignment:
| Q |
17 |
catagggtcaaaacttatgaagcacggacgtagacgcagacacattaactttaaacaatgacttaattaattcagtgt |
94 |
Q |
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| T |
107128 |
catagggtcaaaacgtatgaagcacgaacatagacacatacacattaactttaaacaatgacttaattaattaagtgt |
107051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 87595 - 87547
Alignment:
| Q |
130 |
tacttgggtcgcgagcggtggctttaacagtgtaaccacgatggagaag |
178 |
Q |
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| T |
87595 |
tacttggatcgcgaacggtggctttaacagtgtagccacgatgaagaag |
87547 |
T |
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