View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21627_high_12 (Length: 276)
Name: NF21627_high_12
Description: NF21627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21627_high_12 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 270
Target Start/End: Complemental strand, 34325210 - 34324954
Alignment:
| Q |
14 |
aaaatacacatagctgctgaggtcaaacgataccaacaaaagttgatcatcattactcaaccaatgacaaattccatcattcgtgtataatatacggttg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
34325210 |
aaaatacacatagctgctgaggtcaaacgataccaacaaaagttgatcatcattactcaaccaatgacaaattccatcattcgtgtataatatatgtttg |
34325111 |
T |
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| Q |
114 |
tttgtatccgaaggcatattgacatcaagtttttcccaagtgttacatcttaaactataaatctcccatacagtattgtaaaatattttttccgattgcg |
213 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34325110 |
tttatatccgaaggcatattgacatcaagtttttcccaagtgttacatcttaaactataaatctcccatacagtattgtaaaatattttttccgattgcg |
34325011 |
T |
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| Q |
214 |
cttcttctggtagattgagataaaaaagatctctttcacttaatggagaattatcta |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
34325010 |
cttcttctggtagattgagataaaaaagatctctttcacttaatggaaaataatcta |
34324954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 125 - 260
Target Start/End: Original strand, 29352756 - 29352894
Alignment:
| Q |
125 |
aggcatattgacatcaagtttttcccaagtgttacatcttaaactataaatctcccatacagtattgtaaaatattttt---tccgattgcgcttcttct |
221 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||| |||||| |
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| T |
29352756 |
aggcagatcgacatcaagtttttcccaagtgttacatcttaaactataaatctcccatacatcatcataaaatattttttcctccgattgcgcatcttct |
29352855 |
T |
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| Q |
222 |
ggtagattgagataaaaaagatctctttcacttaatgga |
260 |
Q |
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| T |
29352856 |
agtagattgagataaagaagatcttcttcacttaatgga |
29352894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 29352621 - 29352717
Alignment:
| Q |
14 |
aaaatacacatagctgctgaggtcaaacgataccaacaaaagttgatcatca---ttactcaaccaatgacaaattccatcattcgtgtataatata |
107 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
29352621 |
aaaatacacatagctgctaaggtcaaacgataccaaccaaagttgatcattatttttactcaaccaatgacaaattccatcattcgtgtataatata |
29352717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 44938120 - 44938177
Alignment:
| Q |
125 |
aggcatattgacatcaagtttttcccaagtgttacatcttaaactataaatctcccat |
182 |
Q |
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| T |
44938120 |
aggcatattgacatcaagtttcttccaagaattacaccttaagctataaatctcccat |
44938177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 276
Target Start/End: Complemental strand, 4027786 - 4027524
Alignment:
| Q |
14 |
aaaatacacatagctgctgaggtcaaacgataccaacaaaagttgatcatcattactcaaccaatgacaaattccatcattcgtgtataatatacggttg |
113 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| | | | |
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| T |
4027786 |
aaaatacacatagctgctgaggtcaaacgatactaaccaaagtcgatcatcattatttaaccaatgacaaattccatcattcgtgtataatatatgttgg |
4027687 |
T |
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| Q |
114 |
tttgtatccgaaggcatattgacatcaagtttttcccaagtgttacatcttaaactataaatctcccatacagtattgtaaaatattttttccgattgcg |
213 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
4027686 |
tttgtatccgaaagcatattgacatcaagtttttcccaagtgttacatcttaaactataaatctcccatacattatcataaaatattttttccgattgcg |
4027587 |
T |
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| Q |
214 |
cttcttctggtagattgagataaaaaagatctctttcacttaatggagaattatctagccacc |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||| |
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| T |
4027586 |
cttcttctggtagattgagataaaaaagatctctttcacttaatggaaaataatctagacacc |
4027524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 182
Target Start/End: Complemental strand, 30249675 - 30249508
Alignment:
| Q |
21 |
acatagctgctgaggtcaaacgataccaacaaaagttgatcatcatt---actcaaccaatgacaaattccatcattcgtgtataatata---cggttgt |
114 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||| | | |||||||||||| |||||||||||||||| ||||| | | || || |
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| T |
30249675 |
acatagctgctgaggtcaaatgataccaagcaaagttgatcatcagtttcagacaaccaatgacatattccatcattcgtgtttaatagatctctgtagt |
30249576 |
T |
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| Q |
115 |
ttgtatccgaaggcatattgacatcaagtttttcccaagtgttacatcttaaactataaatctcccat |
182 |
Q |
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|| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
30249575 |
atgaccgcgaaggcatattgacatcaagttttttccaagtgttacatcttagactataaatctcccat |
30249508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 25627957 - 25627898
Alignment:
| Q |
126 |
ggcatattgacatcaagtttttcccaagtgttacatcttaaactataaatctcccataca |
185 |
Q |
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||||||| ||||| ||||| || ||||||||||||||||| ||||||||||||||||||| |
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| T |
25627957 |
ggcatatcgacatgaagttctttccaagtgttacatcttagactataaatctcccataca |
25627898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 30651329 - 30651273
Alignment:
| Q |
129 |
atattgacatcaagtttttcccaagtgttacatcttaaactataaatctcccataca |
185 |
Q |
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|||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30651329 |
atatcgacatgaagttattcccaagtgttacatcttaaactataaatctcccataca |
30651273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 31777675 - 31777618
Alignment:
| Q |
129 |
atattgacatcaagtttttcccaagtgttacatcttaaactataaatctcccatacag |
186 |
Q |
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|||| ||||| ||||| ||||||||||||||||| || |||||||||||||||||||| |
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| T |
31777675 |
atatcgacatgaagttcttcccaagtgttacatcgtagactataaatctcccatacag |
31777618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 20426368 - 20426310
Alignment:
| Q |
125 |
aggcatattgacatcaagtttttcccaagtgttacatcttaaactataaatctcccata |
183 |
Q |
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||||||||||| |||||||||| ||||| ||||||||||| |||||||||||||||| |
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| T |
20426368 |
aggcatattgaaatcaagttttctccaagagttacatcttacgctataaatctcccata |
20426310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 4877607 - 4877551
Alignment:
| Q |
125 |
aggcatattgacatcaagtttttcccaagtgttacatcttaaactataaatctccca |
181 |
Q |
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||||||||||| ||||||||| | ||||| ||||| ||||| ||||||||||||||| |
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| T |
4877607 |
aggcatattgaaatcaagtttcttccaagagttacttcttagactataaatctccca |
4877551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 13477628 - 13477586
Alignment:
| Q |
144 |
ttttcccaagtgttacatcttaaactataaatctcccatacag |
186 |
Q |
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||||| |||||||||||||||| ||||||||||||||| |||| |
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| T |
13477628 |
ttttctcaagtgttacatcttagactataaatctcccaaacag |
13477586 |
T |
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